You didn’t set all of the required options: --ref= --refbrain= --refmask= --ref2mm= --ref2mmmask=
Matt. From: <hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>> on behalf of "outlook_c843878f00767...@outlook.com<mailto:outlook_c843878f00767...@outlook.com>" <outlook_c843878f00767...@outlook.com<mailto:outlook_c843878f00767...@outlook.com>> Date: Tuesday, September 18, 2018 at 11:55 PM To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: [HCP-Users] An error when running AtlasRegistionToMNI152_FLIRTandFNIRT.sh Dear HCP experts Hi, I am Qunjun, A PhD student in China. I got an error when I ran PreFreeSurfer.sh. It came out when the program proceeded to AtlasRegistionToMNI152_FLIRTandFNIRT.sh. ----------------------------------- START: AtlasRegistration to MNI152 Unrecognised option / --------------------------------------- I realized that it maybe due to an needless ‘/’ in script. But after searching the script, I still have no idea about this problem. Anyway, I found a log text in /MNINonLinear/ and I think it would be helpful to fix the problem so I placed it in attachment. Looking forward to your reply Best wishes Qunjun 发送自 Windows 10 版邮件<https://go.microsoft.com/fwlink/?LinkId=550986>应用 _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
