Thanks for prompt response! Tim! Yes, the volume files are individual results. And this data is not part of HCP S1200 released data, but for the our data. That’s why "SubjID=300" seems to be unclear to you.
I have one more quick question. If I want to have MSMAll-registered data for "$StudyFolder/$Subject/MNINonLinear/Results/rfMRI_REST1_AP/rfMRI_REST1_AP_Atlas.dtseries.nii" (which is not FIX-cleaned data), do I have to run MSMAll pipeline with changing input variable name? or is there a simple command for getting that as volume-to-surface-mapping? Thanks again. Sang-Young > On Sep 28, 2018, at 7:42 PM, Timothy Coalson <tsc...@mst.edu> wrote: > > If the volume files are per-individual results, then mapping them to that > individual's own MSMAll surfaces will result in them being accurately > registered through multimodal surface matching, yes. I am not clear on the > "SubjID=300" line, though. > > To be clear, group average "subjects" do not count for this process, and any > group MNI space volume results for all of cortex can't be accurately mapped > to surfaces (the accuracy has already been lost due to volume-based group > averaging). > > However, the typical HCP process is to put the unprocessed (well, > preprocessed) individual cortical data onto surfaces via the individual's own > surfaces, and then compute results in cifti space, not MNI. We typically use > the native mesh surfaces to achieve the most fidelity to the original > segmentation, and then resample afterward, but the 32k surfaces are probably > good enough. > > Tim > > > On Fri, Sep 28, 2018 at 6:04 PM, Sang-Young Kim <sykim...@gmail.com > <mailto:sykim...@gmail.com>> wrote: > Dear Experts: > > I have a certain kinds of volume maps in MNI space. I would like to mapping > this map to surface. > I know how to use wb_command -volume-to-surface-mapping. > My question is that if I use following command, is this also multi-modal > surface matched map? > > StudyFolder="/Volumes/easystore/projects/HCP" > SubjID="300" > AtlasFolder="$StudyFolder/$SubjID/MNINonLinear/fsaverage_LR32k" > ResultFolder="$StudyFolder/$SubjID/MNINonLinear/Results/rfMRI_REST1_AP" > MapName="rfMRI_REST1_AP_map_tstat.nii.gz" > > # Left hemi > /Applications/workbench/bin_macosx64/wb_command -volume-to-surface-mapping \ > $ResultFolder/$MapName \ > $AtlasFolder/${SubjID}.L.midthickness_MSMAll.32k_fs_LR.surf.gii \ > $ResultFolder/L.card_coupling_tstat.32k_fs_LR.func.gii \ > -ribbon-constrained $AtlasFolder/${SubjID}.L.white_MSMAll.32k_fs_LR.surf.gii \ > $AtlasFolder/${SubjID}.L.pial_MSMAll.32k_fs_LR.surf.gii \ > > > If not, could anyone please let me know how to do that? > > Thanks in advance. > > Best, > > Sang-Young > _______________________________________________ > HCP-Users mailing list > HCP-Users@humanconnectome.org <mailto:HCP-Users@humanconnectome.org> > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > <http://lists.humanconnectome.org/mailman/listinfo/hcp-users> > _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
