Hello, After running the hcp_fix_multi_run.sh script on the task data, a folder for concatenated files is created and a .ica folder is created in each task folder.
However, MSMAllPipeline.sh script tries to find /filtered_func_data.ica/melodic_mix, which is present only in the Concat folder. When the script is run on the Concat folder, the output is a _MSMAll_hp2000_clean_vn.dtseries.nii file within a new output folder. Is this the correct output? Should we use the MSMAll.sh (not MSMAllpipeline.sh) instead and then apply DeDriftAndResamplePipeline.sh to get _MSMAll_hp2000_clean.dtseries.nii file for each task separately? Thank you Shankar Tumati Mind, Brain Imaging and Neuroethics lab University of Ottawa _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
