Is this with the latest melodic? Matt.
On 10/10/18, 2:54 PM, "hcp-users-boun...@humanconnectome.org on behalf of Shankar Tumati" <hcp-users-boun...@humanconnectome.org on behalf of shankar.tum...@theroyal.ca> wrote: >Hi > >We get these seemingly random errors when implementing the >hcp_fix_multi_run code on the task data with some subjects. We need help >to figure it out. > >Below is the output for two of the subjects. It the same error in all >cases but with different column numbers. > >Thanks, >Shankar >--------- > >Wed Oct 10 13:40:11 EDT 2018 - hcp_fix_multi_run - INFORM - melodic_cmd: >/usr/local/fsl-5.0/bin/melodic -i day2_hp2000_vnf -o >day2_hp2000.ica/filtered_func_data.ica --nobet --report --Oall >--tr=0.720000 --vn --dim=160 --verbose --debug -m >/group/northoff/share/hcp_task_prep_fix/104416/MNINonLinear/Results/day2/d >ay2_brain_mask > >Melodic Version 3.14 > >Melodic results will be in day2_hp2000.ica/filtered_func_data.ica > >START: setup >START: setup_misc >Mask provided : >/group/northoff/share/hcp_task_prep_fix/104416/MNINonLinear/Results/day2/d >ay2_brain_mask > >END: setup_misc > after setup_misc START: setup_classic >START: process_file > before reading file day2_hp2000_vnfReading data file day2_hp2000_vnf >... done > after reading file day2_hp2000_vnf before est smoothness Estimating >data smoothness ... done > after smoothness before reshape after reshape Removing mean image >... before remmean after remmean done >END: process_file > after process_file Excluding voxels with constant value ... done > day2_hp2000.ica/filtered_func_data.ica/alldat > > > >An exception has been thrown >Logic error:- detected by Newmat: index error: requested index = 0 > >MatrixType = Rect # Rows = 1; # Cols = 1994 > >Wed Oct 10 14:41:57 EDT 2018 - hcp_fix_multi_run - INFORM - melodic has >been run: return_code = 0 >-------------------------------------------------------------------------- >-------------------------------------------------------------------------- >------------------------------ > >Wed Oct 10 14:07:43 EDT 2018 - hcp_fix_multi_run - INFORM - melodic_cmd: >/usr/local/fsl-5.0/bin/melodic -i day1_hp2000_vnf -o >day1_hp2000.ica/filtered_func_data.ica --nobet --report --Oall >--tr=0.720000 --vn --dim=139 --verbose --debug -m >/group/northoff/share/hcp_task_prep_fix/130114/MNINonLinear/Results/day1/d >ay1_brain_mask > >Melodic Version 3.14 > >Melodic results will be in day1_hp2000.ica/filtered_func_data.ica > >START: setup >START: setup_misc >Mask provided : >/group/northoff/share/hcp_task_prep_fix/130114/MNINonLinear/Results/day1/d >ay1_brain_mask > >END: setup_misc > after setup_misc START: setup_classic >START: process_file > before reading file day1_hp2000_vnfReading data file day1_hp2000_vnf >... done > after reading file day1_hp2000_vnf before est smoothness Estimating >data smoothness ... done > after smoothness before reshape after reshape Removing mean image >... before remmean after remmean done >END: process_file > after process_file Excluding voxels with constant value ... done > day1_hp2000.ica/filtered_func_data.ica/alldat > > > >An exception has been thrown >Logic error:- detected by Newmat: index error: requested index = 0 > >MatrixType = Rect # Rows = 1; # Cols = 1882 > >Wed Oct 10 14:57:27 EDT 2018 - hcp_fix_multi_run - INFORM - melodic has >been run: return_code = 0 > > >_______________________________________________ >HCP-Users mailing list >HCP-Users@humanconnectome.org >http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
