See the various -cifti-create-* commands.
-- Michael Harms, Ph.D. ----------------------------------------------------------- Associate Professor of Psychiatry Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO 63110 Email: mha...@wustl.edu From: Reza Rajimehr <rajim...@gmail.com> Date: Friday, November 16, 2018 at 1:50 PM To: "Harms, Michael" <mha...@wustl.edu> Cc: "Glasser, Matthew" <glass...@wustl.edu>, "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: Re: [HCP-Users] Number of cortical vertices in cifti and gifti files Is there a command to convert LH (or RH) gifti file to hcp cifti file? On Fri, Nov 16, 2018 at 10:55 PM Harms, Michael <mha...@wustl.edu<mailto:mha...@wustl.edu>> wrote: No, it is more complicated than that. I believe what you need is -cifti-export-dense-mapping Cheers, -MH -- Michael Harms, Ph.D. ----------------------------------------------------------- Associate Professor of Psychiatry Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave<https://maps.google.com/?q=660+South+Euclid+Ave&entry=gmail&source=g>. Tel: 314-747-6173 St. Louis, MO 63110 Email: mha...@wustl.edu<mailto:mha...@wustl.edu> From: <hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Reza Rajimehr <rajim...@gmail.com<mailto:rajim...@gmail.com>> Date: Friday, November 16, 2018 at 1:17 PM To: "Glasser, Matthew" <glass...@wustl.edu<mailto:glass...@wustl.edu>> Cc: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] Number of cortical vertices in cifti and gifti files Thanks! Can I simply say that: For left hemisphere: vertex number in cifti = vertex number (up to 29706) in LH gifti For right hemisphere: vertex number in cifti = vertex number (up to 29706) in RH gifti + 29706 Or the mapping is more complicated than this? On Fri, Nov 16, 2018 at 9:56 PM Glasser, Matthew <glass...@wustl.edu<mailto:glass...@wustl.edu>> wrote: That is correct, the medial wall is kept out. Usually when I want to do that I split the CIFTI file into hemispheric GIFTI files, but perhaps there is a good way to load in a specific mapping based on something we can output from wb_command. Matt. From: <hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Reza Rajimehr <rajim...@gmail.com<mailto:rajim...@gmail.com>> Date: Friday, November 16, 2018 at 10:17 AM To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: [HCP-Users] Number of cortical vertices in cifti and gifti files Hi, A cifti file has 91282 vertices/voxels, a combined LR cifti file has 59412 vertices, and an individual hemisphere gifti file has 32492 vertices. So the number of cortical vertices in cifti files is less than the number of cortical vertices in gifti files (left hemi vertices + right hemi vertices = 64984). Looks like this is related to not having medial wall vertices in the cifti files, right? We have loaded these files in Matlab. Now we want to know which vertex in right (or left) hemisphere gifti file corresponds to which vertex in the cifti file. How can we achieve this? Best, Reza _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
