I am still new to the wb_command suite and trying to understand how to best use them.
I have created an individual cifti (dconn.nii) for each of my subjects in 32kfslr and would like to make an average. I would like to use wb_command -cifti-average output.dconn.nii -cifti subject1.dconn.nii -cift subject2.dconn.nii . . .-cifti subjectN.dconn.nii But this results in a dimension mismatch since the sub cortical portions of the individual subjects are different. Is there a way to only grab the surface data from each of the individual dconns so I do not get the dimension error. I tried using wb_command -cifti-restrict-dense-map subjectN.dconn.nii 'ROW/COLUMN' subjectN_output.dconn.nii -left-roi $left -right-roi $right where the left and right rois are: subjectN.L.aparc.32k_fs_LR.label.gii subjectN.R.aparc.32k_fs_LR.label.gii but since I am newer to the wb_commands, I am not sure what each of the inputs should be or if this is the correct command. This also resulted in an error. WARNING: Metric File: subjectN.L.aparc.32k_fs_LR.label.gii contains data array with NIFTI_INTENT_LABEL !!! WARNING: Metric File: subjectN.R.aparc.32k_fs_LR.label.gii contains data array with NIFTI_INTENT_LABEL !!! As well as an error when I tried to use the file saying something about fields not being the same size. Or is there a way to generate the surface dconns via command line without the subcortical information so I don't get the dimension mismatch error when I try to make an average? Any help is greatly appreciated. And specific example file names are also very much appreciated. Thanks! ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
