I don’t see these being generated in our current test FreeSurfer 6.0 runs.  How 
are they generated?

Matt.

From: 
<hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>>
 on behalf of "Sanchez, Juan (NYSPI)" 
<juan.sanc...@nyspi.columbia.edu<mailto:juan.sanc...@nyspi.columbia.edu>>
Date: Wednesday, February 6, 2019 at 12:56 PM
To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" 
<hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>>
Subject: [HCP-Users] FreeSurfer6 subcortical segmentation


Hey HCP community

When Freesurfer 6.0  is implemented into the HCP Pipeline, are there plans to 
use the subcortical segmentation script outputs (amygdala and thalamus mgz 
files) into cifti space (column 3)?

If so will they be an addition to the current ROI atlas or will they be 
separate?


Thanks so much

Juan



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