Dear HCP experts,
I have some questions about using the HCP structural preprocessing pipeline. 1. For the parameters “T1wSampleSpacing” and “T2wSampleSpacing”, are they the same across different Skyra scanners? Will this significantly affect preprocessing quality if setting them to “NONE”? 2. I noticed some cortical regions were excessively removed in the file “T2w_acpc_brain.nii.gz” in “T2w” folder. Would this indicate any problem of brain extraction? If so, would you please suggest how to fix this problem? 3. I received the error “Unexpected parameter: -local-affine-method” when using “PostFreeSurferPipelineBatch.sh”. It occurred when the script tried to call wb_command to do some operations with the flag “-local-affine-method”. Would you please suggest how to fix this error? 4. I received a lot of “name collision in input name” warnings. I guess these warnings does not matter? 5. Will the updated pipeline using FreeSurfer 6.0.0 possibly be available in the near future (sometime this month)? Thank you. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
