How did you call fMRISurface and what kind of data is this in terms of spatial and temporal resolution? Do the input and template data line up and look reasonable?
Matt From: <hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Shachar Gal <gal.shac...@gmail.com<mailto:gal.shac...@gmail.com>> Date: Sunday, March 31, 2019 at 8:27 AM To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] wb_command -cifti-resample in sub-cortical processing taking suspiciously long while some further information that might be useful - the output file rfMRI_REST_AP_temp_atlas.dtseries.nii, has already been created. its in the target folder. but the command won't stop "running" On Sun, 31 Mar 2019 at 16:13, Shachar Gal <gal.shac...@gmail.com<mailto:gal.shac...@gmail.com>> wrote: Dear experts, while running the fMRISurface pipeline (using the latest pipeline release) I encountered an issue where the subcortical-processing script takes a really long while (now running for more than 6 hours). this is the command on which it is stuck ${CARET7DIR}/wb_command -cifti-resample ${ResultsFolder}/${NameOffMRI}_temp_subject_smooth.dtseries.nii COLUMN ${ResultsFolder}/${NameOffMRI}_temp_template.dlabel.nii COLUMN ADAP_BARY_AREA CUBIC ${ResultsFolder}/${NameOffMRI}_temp_atlas.dtseries.nii -volume-predilate 10 rm -f ${ResultsFolder}/${NameOffMRI}_temp_subject_smooth.dtseries.nii the wb_command version is 1.3.2 there is no error being raise or anything. its still running, but its ages... the thing is, when running the older version of the pipeline (but the same workbench version), there was no problem. any ideas? ill report later on if it completes the command eventually.... thanks, Shachar _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
