Dear Expert, I am running a PALM analysis with two groups. A represents group with autism, N represents group without autism. I currently have four subjects from the N group and 1 subject from the A group. Below I listed my contrast and design etc. I am running into the following error. I searched the FSL blog, some people say it is the version of PALM, and recommended to use an older version of PALM instead. Any suggestions/feedbacks would be much appreciated. Thank you for your help in advance!
Best, Yu The contrast.csv file looks like this: 1,0 0,1 1,-1 -1,1 The design.csv file looks like this: GNU nano 2.3.1 File: design.csv 1 0 0 1 0 1 0 1 0 1 The command I ran looks like this: palm -i tfMRI_EmoRec_ES_vs_HS_s5_beta.dscalar.nii -n 0 -transposedata -o EmoRec_ES_vs_HS_PALM -logp -d design.csv -t contrast.csv -ise -saveglm And I got this error. Found FSL in /gpfs1/arch/x86_64-rhel7/fsl-5.0.11/fsl Found FreeSurfer in /gpfs1/arch/x86_64-rhel7/freesurfer-5.3.0-HCP Found HCP Workbench executable in /gpfs1/home/y/h/yhan8/tools/workbench/bin_rh_linux64/wb_command Reading input 1/1: tfMRI_EmoRec_ES_vs_HS_s5_beta.dscalar.nii Error using permute (/users/y/h/yhan8/PALM/palm-alpha114/fileio/@file_array/permute.m:10) file_array objects can not be permuted. Error in gifti_Data (/users/y/h/yhan8/PALM/palm-alpha114/fileio/@gifti/private/read_gifti_file.m:201->permute) Error in gifti_DataArray (/users/y/h/yhan8/PALM/palm-alpha114/fileio/@gifti/private/read_gifti_file.m:122->gifti_Data) Error in read_gifti_file (/users/y/h/yhan8/PALM/palm-alpha114/fileio/@gifti/private/read_gifti_file.m:45->gifti_DataArray) Error in gifti (/users/y/h/yhan8/PALM/palm-alpha114/fileio/@gifti/gifti.m:89->read_gifti_file) Error in palm_ciftiread (/users/y/h/yhan8/PALM/palm-alpha114/palm_ciftiread.m:84->gifti) Error in palm_miscread (/users/y/h/yhan8/PALM/palm-alpha114/palm_miscread.m:181->palm_ciftiread) Error in palm_ready (/users/y/h/yhan8/PALM/palm-alpha114/palm_ready.m:47->palm_miscread) Error in palm_takeargs (/users/y/h/yhan8/PALM/palm-alpha114/palm_takeargs.m:1645->palm_ready) Error in palm_core (/users/y/h/yhan8/PALM/palm-alpha114/palm_core.m:33->palm_takeargs) Error in palm (/users/y/h/yhan8/PALM/palm-alpha114/palm.m:81->palm_core) Yu Han Ph.D. Candidate Neuroscience Graduate Program The Vermont Complex Systems Center University of Vermont _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
