Dear Experts,
I am running the following script MSMAllPipelineBatch.sh from
${StudyFolder}/${Subject}/scripts after running MR ICA+FIX with success, and I
am getting the following error:
ERROR: failed to open file
'/Volumes/data/data3/NTTMS/NTTMS_s002/NTTMS_s002_170812/MNINonLinear/Results/RS_fMRI_MR/RS_fMRI_MR_Atlas_hppd2_clean_vn_tempcompute.dscalar.nii',
file does not exist, or folder permissions prevent seeing it
I set up the script as follow:
fMRINames="RS_fMRI_MR"
OutfMRIName="RS_fMRI_MR_REST"
HighPass="pd2"
fMRIProcSTRING="_Atlas_hppd2_clean"
MSMAllTemplates="${HCPPIPEDIR}/global/templates/MSMAll"
RegName="MSMAll_InitalReg"
HighResMesh="164"
LowResMesh="32"
InRegName="MSMSulc"
MatlabMode="1" #Mode=0 compiled Matlab, Mode=1 interpreted Matlab
I checked and the file called: *tempcompute.dscalar.nii’, is not there.
What am I doing wrong? Something went wrong in the previous step while running
MR ICA+FIX that I am not aware of?
Thanks a lot!
Leah.
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