Thanks Michael. We will use PALM. But what is the application of wb_command -metric-tfce then?
On Sun, Apr 21, 2019 at 2:38 AM Harms, Michael <[email protected]> wrote: > > > Hi, > > We suggest you use PALM, since you need to use permutation to determine > the distribution of the TFCE metric. > > > > Cheers, > > -MH > > > > -- > > Michael Harms, Ph.D. > > ----------------------------------------------------------- > > Associate Professor of Psychiatry > > Washington University School of Medicine > > Department of Psychiatry, Box 8134 > > 660 South Euclid Ave > <https://maps.google.com/?q=660+South+Euclid+Ave&entry=gmail&source=g>. > Tel: 314-747-6173 > > St. Louis, MO 63110 Email: [email protected] > > > > *From: *<[email protected]> on behalf of Reza > Rajimehr <[email protected]> > *Date: *Saturday, April 20, 2019 at 7:18 PM > *To: *hcp-users <[email protected]> > *Subject: *[HCP-Users] wb_command -metric-tfce > > > > Hi, > > > > We have curvature data from two groups of subjects in a common anatomical > space (MSMAll). We performed a univariate comparison between the two groups > using t-test. We now have a map, which shows vertex-wise curvature > difference between the two groups (the curvature difference is shown only > for vertices which have a significant difference). The next step is to do > cluster-wise correction using TFCE method. It looks like this command can > do what we want: > > > > https://www.humanconnectome.org/software/workbench-command/-metric-tfce > > > > However, we couldn’t find any example command, and its usage is a bit > unclear for us. For example, how should we specify the two groups? > > > > Any help would be appreciated. > > > > Note: Our analysis here is somewhat similar to the analysis in Figure 5B > in Van Essen et al. 2012 paper: > > > > https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3432236/pdf/bhr291.pdf > > > > Best, > > Reza > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > ------------------------------ > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
