Dear Michael,
I have now downloaded the majority of subjects with:
curl -o …/${sub}_${run}_Movement_RelativeRMS.txt -u USER:PASS
https://db.humanconnectome.org/data/projects/HCP_1200/subjects/${sub}/experiments/${sub}_CREST/files/MNINonLinear/Results/${run}/Movement_RelativeRMS.txt<https://db.humanconnectome.org/data/projects/HCP_1200/subjects/$%7bsub%7d/experiments/$%7bsub%7d_CREST/files/MNINonLinear/Results/$%7brun%7d/Movement_RelativeRMS.txt>
However, these subjects still seem to be missing: 101006 127226 148335 159441
188145 204016 285345 316835 368551 926862 927359 942658
Is that normal?
Thank you,
Leonardo Tozzi, MD, PhD
Williams PanLab | Postdoctoral Researcher
Stanford University | 401 Quarry Rd
[email protected]<mailto:[email protected]> | (650) 5615738
From: "Harms, Michael" <[email protected]>
Date: Wednesday, May 15, 2019 at 9:31 AM
To: Leonardo Tozzi <[email protected]>, "[email protected]"
<[email protected]>
Subject: Re: [HCP-Users] Downloading movement regressors from HYA release
Hi,
The Movement_RelativeRMS.txt files aren’t part of the specific “${run}_FIX”
resource that you tried to reference.
If you have access to outputs in our standard file/directory organization
(e.g., Amazon S3, Connectome-in-a-Box, or our downloaded “packages”), the
Movement_RelativeRMS.txt files can be found at
${subj}/MNINonLinear/Results/${run}.
If not, the “CREST” resource (search the previous HCP-User emails) is what we
are intending users to use, which is intended to mimic the standard
file/directory organization in terms of where files are located.
See FAQ 15 here
https://wiki.humanconnectome.org/display/PublicData/HCP+Users+FAQ
and the archived user list posts referenced therein.
Regarding your item (2), I just confirmed that Movement_Regressors.txt exists
for all 4 REST runs for all 6 of those subjects at MNINonLinear/Results/${run}
in our unpacked packages, and thus should exist in Amazon S3,
Connectome-in-a-Box, and via the CREST resource as well.
Cheers,
-MH
--
Michael Harms, Ph.D.
-----------------------------------------------------------
Associate Professor of Psychiatry
Washington University School of Medicine
Department of Psychiatry, Box 8134
660 South Euclid Ave. Tel: 314-747-6173
St. Louis, MO 63110 Email: [email protected]
From: <[email protected]> on behalf of Leonardo Tozzi
<[email protected]>
Date: Tuesday, May 14, 2019 at 3:50 PM
To: "[email protected]" <[email protected]>
Subject: [HCP-Users] Downloading movement regressors from HYA release
Dear Experts,
Similarly to what described in this thread:
https://www.mail-archive.com/[email protected]/msg01342.html
I have downloaded motion regressors for files from the healthy young adult
release with the following command:
curl -o …/${sub}_${run}_Movement_ Regressors.txt -u USER:PASSWORD
https://db.humanconnectome.org/data/projects/HCP_1200/subjects/${sub}/experiments/${sub}_3T/resources/${run}_FIX/files/${run}/Movement_Regressors.txt
However, I have 2 follow-up questions.
1. I would like to download the relative motion file,
Movement_RelativeRMS.txt, to do some motion censoring on the resting state
data. But if I try the same command with Movement_RelativeRMS.txt instead of
Movement_Regressors.txt I get an error saying that the file does not exist.
2. For some subjects, I can’t find even the Movement_Regressors.txt. Is
there any reason for this? These are the IDs: '127226' '130114' '169040'
'329844' '908860' '971160'
Thank you,
Leonardo Tozzi, MD, PhD
Williams PanLab | Postdoctoral Fellow
Stanford University | 401 Quarry Rd
[email protected]<mailto:[email protected]> | (650) 5615738
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