I have a pdconn input (cortical ptseries by subcortical dtseries) that I'd like to analyze with PALM, but I'm having some trouble. I only found one old post related to this, but the only suggestion was to use -transpose data flag in palm. When palm tries to read in the pdconn, I get an error "Undefined function or variable 'Y'". The command line output is below. I tried with the data transposed and not, but I get the same error. I tried to separate the pdconn to just the volume, but this yielded a segmentation error: ($ wb_command -cifti-separate input.pdconn.nii ROW -volume-all test /Applications/workbench/bin_macosx64/wb_command: line 14: 1248 Segmentation fault: 11 "$directory"/../macosx64_apps/wb_command.app/Contents/MacOS/wb_command "$@" ).
Are there any additional commands I can run on a pdconn to separate each parcel and have a series of dconn files? I'd be interested in doing this in order to compare the dense connectivity maps for different parcels. Thanks! Joe *Command line output for palm* Running PALM alpha115 using MATLAB 9.5.0.1067069 (R2018b) Update 4 with the following options: -i input.pdconn.nii -transposedata -o palm -d design.mat -t design.con -T Found FSL in /usr/local/fsl Found FreeSurfer in /Applications/freesurfer Found HCP Workbench executable in /Applications/workbench/bin_macosx64/wb_command Reading input 1/1: input.pdconn.nii Error using palm_ready (/Users/josephorr/Documents/MATLAB/palm-alpha115/palm_ready.m:141) Undefined function or variable 'Y' -- Joseph M. Orr, Ph.D. Assistant Professor Department of Psychological and Brain Sciences Texas A&M Institute for Neuroscience Texas A&M University College Station, TX _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
