Hi Kunal, Please make sure you have mpif.h under the include directories you specified. And it is better to use MPI fortran compiler (check if you have mpif90).
Elena On Jun 5, 2010, at 10:07 PM, kunal rao wrote: > Hi Quincey, > > Thanks for your reply. I tried with mpicc as well..but still I got the same > error.. > > Regards, > Kunal > > On Sat, Jun 5, 2010 at 11:02 PM, Quincey Koziol <koz...@hdfgroup.org> wrote: > Hi Kunal, > > On Jun 5, 2010, at 7:19 PM, kunal rao wrote: > >> Hello: >> >> I am trying to compile and build hdf5 1.6 with parallel I/O on my laptop >> running Ubuntu 9.10 on a virtual machine. >> >> I have configured id with the following command: >> >> $CC=gcc F9X=/usr/bin/gfortran CPPFLAGS=-I/usr/include/mpi/ >> FFLAGS=-I/usr/include/mpich2/ ./configure >> --prefix=/home/kunalgrao/Desktop/hdf5_parallel --enable-parallel >> --enable-fortran |tee configure_parallel.log >> >> But when I do $ make >> I get the following error after some time : >> >> make[3]: Entering directory >> `/home/kunalgrao/Desktop/hdf5-1.6.10/fortran/testpar' >> /usr/bin/gfortran -I. -I/usr/include/mpich2/ -I. -I../src -c >> thyperslab_wr.f90 -o thyperslab_wr.o >> thyperslab_wr.f90:54.26: >> >> comm = MPI_COMM_WORLD >> 1 >> Error: Symbol 'mpi_comm_world' at (1) has no IMPLICIT type >> thyperslab_wr.f90:55.25: >> >> info = MPI_INFO_NULL >> 1 >> Error: Symbol 'mpi_info_null' at (1) has no IMPLICIT type >> make[3]: *** [thyperslab_wr.lo] Error 1 >> make[3]: Leaving directory >> `/home/kunalgrao/Desktop/hdf5-1.6.10/fortran/testpar' >> >> Can you please tell me how to rectify this? >> >> I am attaching the log file for configure for your reference. > > First, you probably want the 1.8.5 release of HDF5, which should be > released next week. Here's the link for a release candidate: > > ftp://ftp.hdfgroup.uiuc.edu/pub/outgoing/hdf5/hdf5-1.8.5-pre2/ > > Then, you should use the 'mpicc' command from MPICH2 as your compiler, > instead of trying to get the MPI include files and libraries correct. > > Quincey > > > _______________________________________________ > Hdf-forum is for HDF software users discussion. > Hdf-forum@hdfgroup.org > http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org > > > _______________________________________________ > Hdf-forum is for HDF software users discussion. > Hdf-forum@hdfgroup.org > http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
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