That does sound likely. I gathered the fortran and C functions are much the same. It's good to get the documentation right. Thanks!
Paul On Mon, Sep 5, 2011 at 6:10 PM, <[email protected]> wrote: > You probably looked at the C function for H5LTset_attribute_int and found > "hsize_t size". The types usually match between Fortran and C and actually > there is a mistake in the C documentation and "size" should be of type > size_t and not hsize_t, we'll fix it in the documentation. > > > On Mon, 5 Sep 2011 12:00:34 +0200, Paul Anton Letnes wrote: > >> Thanks, this was very helpful. I suppose I mis-read the documentation >> or code at this point. >> >> Cheers >> Paul >> >> On Mon, Sep 5, 2011 at 11:35 AM, Pierre de Buyl wrote: >> >> Le 4 sept. 11 à 23:08, [email protected] [3] a écrit : >>> >>> >>> On Sun, 4 Sep 2011 16:12:41 +0200, Paul Anton Letnes wrote: >>>> >>>> Hello everyone. >>>>> >>>>> My fortran code using hdf5 compiles nicely on a number of >>>>> machines. >>>>> After losing my laptop (sad, but true) I am now installing >>>>> hdf5 (and >>>>> other stuff) on my machine to be able to compile my code >>>>> again. >>>>> Needless to say, I have made no changes to my code, so >>>>> compilation >>>>> should be a breeze after installing all dependencies. >>>>> >>>>> However, I get a number of errors of this kind (one per >>>>> subroutine >>>>> call, I am doing several): >>>>> >>>>> >>>>> >>>> >>> /home/paulanto/Code/**Rayleigh2D/Rayleigh2D_Modules/** >> R_save.f90:121.29: >> >>> >>>>> (/ i_surface /), int(1, kind=hsize_t), >>>>> hdferr) >>>>> 1 >>>>> Error: Type mismatch in argument 'size' at (1); passed >>>>> INTEGER(8) to >>>>> INTEGER(4) >>>>> >>>>> The relevant subroutine call looks like this: >>>>> call h5ltset_attribute_int_f(file_**id, root, >>>>> n_surfaces_name, & >>>>> (/ i_surface /), int(1, kind=hsize_t), >>>>> hdferr) >>>>> >>>> >>>> h5ltset_attribute_int_f (and probably the other functions) is >>>> expecting "size" to be size_t, not hsize_t. >>>> hsize_t and size_t will only be the same depending on the OS , >>>> compiler flags, etc../ >>>> >>>> Changing hsize_t to size_t should fix the problem(s). >>>> >>> >>> I had the same issue when changing compilers (between ifort and >>> gfortran) that I resolved thanks to your help. >>> >>> Pierre >>> >>> My preliminary conclusion is that hsize_t is somehow not the >>>>> type >>>>> that the hdf5 subroutine is expecting. Probably it coincides >>>>> with the >>>>> correct type on some CPUs or some operating systems, hence it >>>>> has >>>>> worked until now. >>>>> >>>>> My hdf5 library (1.8.7) and my code are both compiled with >>>>> gfortran >>>>> 4.6.1, which I have used with success before. One potential >>>>> difference >>>>> is that this PC (which I'm borrowing) is running 32 bit linux. >>>>> Is the >>>>> error in my code, is there a bug in hdf5, does gfortran handle >>>>> this >>>>> incorrectly, or something else? >>>>> >>>>> Thanks in advance, >>>>> Paul >>>>> >>>> >>>> ______________________________**_________________ >>>> Hdf-forum is for HDF software users discussion. >>>> [email protected] [1] >>>> >>>> http://mail.hdfgroup.org/**mailman/listinfo/hdf-forum_**hdfgroup.org<http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org> >>>> [2] >>>> >>> >>> ______________________________**_________________ >>> Hdf-forum is for HDF software users discussion. >>> [email protected] [4] >>> >>> http://mail.hdfgroup.org/**mailman/listinfo/hdf-forum_**hdfgroup.org<http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org> >>> [5] >>> >> >> >> >> Links: >> ------ >> [1] mailto:[email protected] >> [2] >> http://mail.hdfgroup.org/**mailman/listinfo/hdf-forum_**hdfgroup.org<http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org> >> [3] mailto:[email protected] >> [4] mailto:[email protected] >> [5] >> http://mail.hdfgroup.org/**mailman/listinfo/hdf-forum_**hdfgroup.org<http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org> >> [6] mailto:[email protected].**ca <[email protected]> >> > > > ______________________________**_________________ > Hdf-forum is for HDF software users discussion. > [email protected] > http://mail.hdfgroup.org/**mailman/listinfo/hdf-forum_**hdfgroup.org<http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org> >
_______________________________________________ Hdf-forum is for HDF software users discussion. [email protected] http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
