There is a utility called "chrpath" that can be used to modify the rpath setting of compiled binaries. I have used it with RHEL 5, don't know if it is available for RHEL 6.
On Mon, Nov 4, 2013 at 12:27 PM, Eduardo Jauch <eduardo.ja...@ist.utl.pt>wrote: > Hi, > > Hum... I'm not using cmake. I think... > I just use ./configure, than make, than make check and than make install > > But I will try to use the "-wl..." when compiling my code and see if this > solves the problem of the location of the szlib... > If not, I'll try to do it in the HDF itself :) > > Cheers, > Eduardo Jauch > > Em 04-11-2013 15:40, Yngve Inntjore Levinsen escreveu: > > Hello Eduardo, > > So if I understand right, you want /usr/local/lib to be added to the > hdf5 library, without having to set the ld library path? > > I think something like the following should then work when you > configure (maybe more "correct" solution for hdf5 exist, I have not > checked the cmake scripts): > > LDFLAGS="-Wl,-rpath,/usr/local/lib" cmake ../ > > You can find more information e.g. > here:http://www.cmake.org/Wiki/CMake_RPATH_handling > > Cheers, > Yngve > > On ma. 04. nov. 2013 kl. 10.44 +0100, Eduardo Jauch wrote: > > Hello Matthieu > > Yes. This is what causes my problem. Because I have to compile SZLIB > with intel, but I can't just "replace" the system SZLIB. > > When I put the intel version of SZLIB in a different place, the > program do not find SZLIB. > If I add the path of the SZLIB to the system lib path (where ld goes > look for them), then the program works, but the system stops, because > it tries to use the intel version of SZLIB, instead of the system version. > > I'm trying to figure out a way to solve this dilema. > > Maybe I'm missing something. I figure out that the HDF5 compiling > scripts automatically set up everything to work right when compilig > with intel, but I have to check this. I'm reading the install > documentation. > > Thanks, > > Eduardo Jauch > > Em 04-11-2013 00:31, Matthieu Brucher escreveu: > > Hi, > > IIRC, the gfortran ABI is not compatible with Intel Fortran ABI. You > can't mix them together. So you need to compile SZLIB for Intel > Fortran first. > > Cheers, > > Matthieu > > 2013/11/3 Eduardo Jauch <eduardo.ja...@ist.utl.pt> <eduardo.ja...@ist.utl.pt>: > > Hello! > > I think maybe someone crossed with this problem. > I'm trying to use an HDF5 library with SZIP compiled with intel compilers > (icc, icpc, ifort), in a system (Scientific Linux 6.4) that has already a > version of SZIP compiled with gfortran. > > I put HDF5, SZIP and ZLIB in /usr/local/ > Everything is fine with my program during compilation, but when I try to > execute, it can't find SZLIB. > I tried to put the path to the library in the ld config file, but than, > while this solved my problem and the program runs ok, it broke my system for > other programs (including sudo) that relay on the system version of ZLIB. > > I found that is possible to, through options passed to the linker, to define > the path of a library so that this information is stored in the executable > itself (the path will be fixed, but this is not a problem). > I would like to know if the same can apply to the HDF5 itself, passing such > arguments during ./configure, so that when a program uses HDF5, the lib > knows where to look for the SZLIB... > > I'll do some tests tomorrow or the day after, but if anyone already did this > or know if it's possible or not, it would be nice to hear. > > I thought also to rename the libraries so I can use the first method (adding > the path in the ld config) without the problem of breaking the system, but I > don't know if it is possible or recommended... > > If you have any suggestions, I'm listening. ;) > > Thanks in advance, > Eduardo Jauch > > -- > > > TECNICO Lisboa - MARETEC > Secção de Ambiente e Energia > > Av. Rovisco Pais > 1049-001 Lisboa > > Tel.: +351 21 8419424 > Fax: +351 21 8417365 > > URL: www.mohid.com > > > _______________________________________________ > Hdf-forum is for HDF software users > discussion.Hdf-forum@lists.hdfgroup.orghttp://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org > > > -- > <www.ist.utl.pt> > <www.mohid.com> > > TECNICO Lisboa - MARETEC > Secção de Ambiente e Energia > > Av. Rovisco Pais > 1049-001 Lisboa > > Tel.: +351 21 8419424 > Fax: +351 21 8417365 > > URL: www.mohid.com > > > _______________________________________________ > Hdf-forum is for HDF software users > discussion.Hdf-forum@lists.hdfgroup.orghttp://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org > > > > > -- > <http://www.ist.utl.pt> > > <http://www.mohid.com> > > > TECNICO Lisboa - MARETEC > Secção de Ambiente e Energia > > Av. Rovisco Pais > 1049-001 Lisboa > > Tel.: +351 21 8419424 > Fax: +351 21 8417365 > > URL: www.mohid.com > > > _______________________________________________ > Hdf-forum is for HDF software users discussion. > Hdf-forum@lists.hdfgroup.org > > http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org > > -- George N. White III <aa...@chebucto.ns.ca> Head of St. Margarets Bay, Nova Scotia
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