Hi, Your question should be directed to the h5py mailing list https://groups.google.com/forum/#!forum/h5py
my only suggestion would be to drop "export CC=mpicc" and try again. On Thu, Apr 30, 2015 at 04:00:28PM +0200, simona bellavista wrote: > I am compiling h5py v 2.5.0 on my linux cluster, with hdf5 v 1.8.14, mpi4py > v1.3.1, Cythonv0.22 and python3.3.2. I have compiled h5py many times with > other version of python (example 3.3.6 and 2.7.8). I get an error at build > time. The command I am using and the error are shown below: > > export CC=mpicc > python3 setup.py configure --hdf5=/clusterdata/afylot/local/ --mpi > python3 setup.py build > > mpicc -shared > build/temp.linux-x86_64-3.3/clusterdata/afylot/download/h5py-2.5.0/h5py/defs.o > -L/clusterdata/afylot/local/lib -L/opt/local/lib -L/usr/local/lib > -R/clusterdata/afylot/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 > -lhdf5_hl -o build/lib.linux-x86_64-3.3/h5py/defs.cpython-33m.so > > gcc: error: unrecognized command line option ‘-R’ > gcc: error: unrecognized command line option ‘-R’ > gcc: error: unrecognized command line option ‘-R’ > error: command 'mpicc' failed with exit status 1 _______________________________________________ Hdf-forum is for HDF software users discussion. [email protected] http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org Twitter: https://twitter.com/hdf5
