Hi Pierre, this is the situation of hdf5 in my computer: 11:34:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$> ls /usr/local/hdf5-1.8.14/bin
*COPYING* *compile* *dependencies* *install-sh* *make_err* *missing* output_filter.sh *trace* *buildhdf5* *config.guess* *deploy* *iostats* *make_overflow* *mkdirs* *release* *yodconfigure* *chkmanifest* *config.sub* distdep *locate_sw* *make_vers* *mkinstalldirs* *snapshot* *cmakehdf5* *depcomp* *h5vers* ltmain.sh *makehelp* *newer* test-driver 12:10:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$> ls /usr/local/hdf5-1.8.14/lib ls: /usr/local/hdf5-1.8.14/lib: No such file or directory 12:10:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$> It's missing the libraries folder. 1. I've installed hdf5 following the instructions in the page : https://www.hdfgroup.org/ftp/HDF5/current/src/unpacked/release_docs/INSTALL. 2. The code in fortran is not parallel and I've tried to use h5fc instead of h5pfc. 3. The informations on my gfortran version are: 12:21:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:hdf5-1.8.14:$> gfortran -v Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin14/4.9.2/lto-wrapper Target: x86_64-apple-darwin14 Configured with: ../gcc-4.9.2/configure --prefix=/usr/local/gfortran --with-gmp=/opt/gcc-4.8 --enable-languages=c,c++,fortran,objc,obj-c++ --build=x86_64-apple-darwin14 Thread model: posix gcc version 4.9.2 (GCC) Thank you My Kindest Regards Elisabetta On Mon, Jul 6, 2015 at 2:17 PM, Pierre de Buyl < [email protected]> wrote: > Hi, > > On Sun, Jul 05, 2015 at 02:00:30PM +0300, Elisabetta Strazzeri wrote: > > my set in bashrc is this : > > > > export HDF5=/usr/local/hdf5-1.8.14 > > export PATH=$PATH:${HDF5}/bin > > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${HDF5}/lib > > > > but when I have to use it with hdf5, it doesn't work. > > can you post the result of > > ls /usr/local/hdf5-1.8.14/bin > ls /usr/local/hdf5-1.8.14/lib > > > This would help to diagnose the problem. A few more questions: > 1. How did you install hdf5? If you compiled it yourself you should make > sure > that you have enabled the parallel feature. > 2. Is your code parallel? If not, you can use h5fc instead of h5pfc > 3. It also matters to match the fortran compiler used to compile HDF5 and > the > one you use to build your code. > > Pierre > > > > > > > On Sun, Jul 5, 2015 at 1:20 PM, Elisabetta Strazzeri < > > [email protected]> wrote: > > > > > Hi Pierre, > > > > > > the command : which h5pfc doesn't give me any location of the directory > > > so I need to setup the shell variable Path and others. > > > is there a tutorial of how to set the variables in the bash_profile? > > > > > > thank you > > > my kindest regards > > > Elisabetta > > > > > > On Wed, Jul 1, 2015 at 8:55 PM, Pierre de Buyl < > > > [email protected]> wrote: > > > > > >> Hi Elisabetta, > > >> > > >> The information you give is a bit light. If h5pfc is indeed > installed, its > > >> location will be returned by the command > > >> > > >> which h5pfc > > >> > > >> Note that depending on where you installed HDF5 on your computer, you > may > > >> need > > >> to setup your environment (the shell variables PATH and others). > > >> > > >> Pierre > > >> > > >> On Wed, Jul 01, 2015 at 07:35:20PM +0300, Elisabetta Strazzeri wrote: > > >> > Hello everyone! > > >> > > > >> > I’m working with a MacBook Pro OS X Yosemite Version 10.10.4 > > >> > I’ve installed h5pfc and I’m running a Fortran based software, but I > > >> read this error: > > >> > > > >> > 19:18:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$> > make > > >> > h5pfc -O3 -cpp -fno-range-check -ffree-line-length-none -ffast-math > > >> -c parameters.F90 > > >> > make: h5pfc: No such file or directory > > >> > make: *** [parameters.o] Error 1 > > >> > > > >> > Where is the problem? > > >> > > > >> > Thank you very much > > >> > My Kindest Regards > > >> > Elisabetta > > >> > > >> > > >> _______________________________________________ > > >> Hdf-forum is for HDF software users discussion. > > >> [email protected] > > >> > http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org > > >> Twitter: https://twitter.com/hdf5 > > > > > > > > > > > > _______________________________________________ > > Hdf-forum is for HDF software users discussion. > > [email protected] > > http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org > > Twitter: https://twitter.com/hdf5 > > > -- > ----------------------------------------------------------- > Pierre de Buyl > KU Leuven - Institute for Theoretical Physics > T +32 16 3 27355 > W http://pdebuyl.be/ > ----------------------------------------------------------- > > _______________________________________________ > Hdf-forum is for HDF software users discussion. > [email protected] > http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org > Twitter: https://twitter.com/hdf5 >
_______________________________________________ Hdf-forum is for HDF software users discussion. [email protected] http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org Twitter: https://twitter.com/hdf5
