Hi Dhirendra, ph5diff tests compare output from running some erroneous tests to expected output that is stored as text files. I bet the errors you are seeing are some extra or different output that open mpi prints on termination that causes the comparison to fail. So I wouldn’t worry about it too much, and you can just skip over the failures with make -i check
To confirm that the errors you are seeing are output comparison, run the ph5diff tests manually. May I also suggest that you upgrade to HDF5 1.8.15 then try again? You could also update open-mpi to latest too. Thanks, Mohamad From: Hdf-forum [mailto:[email protected]] On Behalf Of Dhirendra Kumar Sent: Wednesday, July 22, 2015 5:06 AM To: [email protected] Subject: [Hdf-forum] Make check error : hdf5-1.8.12 Dear HDF group, I am trying to build the hdf5-1.8.12 on a linux cluster with the following commands- CC=mpicc ./configure --prefix=$RLIB --with-zlib=$RLIB --with-szlib=$RLIB when I run make after configuration, with some deprecation warnings the make command completes successfully, but make check reflects error as following- ph5diff tests failed with 16 errors. 107.97user 162.33system 1:49.05elapsed 247%CPU (0avgtext+0avgdata 309168maxresident)k 0inputs+28392outputs (0major+5449773minor)pagefaults 0swaps make[5]: *** [testph5diff.sh.chkexe_] Error 1 make[5]: Leaving directory `/home/pmaharana/RLIB/hdf5-1.8.12/tools/h5diff' make[4]: *** [build-check-p] Error 1 make[4]: Leaving directory `/home/pmaharana/RLIB/hdf5-1.8.12/tools/h5diff' make[3]: *** [test] Error 2 make[3]: Leaving directory `/home/pmaharana/RLIB/hdf5-1.8.12/tools/h5diff' make[2]: *** [check-am] Error 2 make[2]: Leaving directory `/home/pmaharana/RLIB/hdf5-1.8.12/tools/h5diff' make[1]: *** [check-recursive] Error 1 make[1]: Leaving directory `/home/pmaharana/RLIB/hdf5-1.8.12/tools' make: *** [check-recursive] Error 1 However the make install completes successfully. I am not able to understand this error. please help me out this error. I have installed openmpi-1.8.4 in $RLIB=/export/home/pmaharana/RLIB with the following options- ./configure --prefix=/export/home/pmaharana/RLIB CC=icc FC=ifort F77=ifort CXX=icpc I am attaching the config.log file for your reference herewith. Thanks in anticipation [https://ssl.gstatic.com/ui/v1/icons/mail/images/cleardot.gif]Dhirendra -- ======================================== Dhirendra Kumar UGC-JRF School of Environmental Sciences, JNU New Delhi (India) Contact: +91 9910778043 Alternate email: [email protected]<mailto:[email protected]> =========================================
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