Hello Peter,
I run Ubuntu-14.04 (that provides CMake-2.8). I use CMake-3.3.0 that I
had to build from source. I use modules.
Is there a specific feature to turn on when building CMake ? HDF5 ? Or
some missing commands (prepend-path) in module files ? Or any other
suggestions ?
Franck
~> more /home/houssen/Programs/ModuleFiles/CMake-3.3.0
#%Module1.0
prepend-path PATH
/home/houssen/Programs/CMake/cmake-3.3.0/local/bin
prepend-path LD_LIBRARY_PATH
/home/houssen/Programs/CMake/cmake-3.3.0/local/lib
prepend-path CMAKE_PREFIX_PATH
/home/houssen/Programs/CMake/cmake-3.3.0/local/local/share/cmake-3.3
~> more /home/houssen/Programs/ModuleFiles/PHDF5-1.8.15
#%Module1.0
module load CMake-3.3.0
prepend-path PATH
/home/houssen/Programs/PHDF5/hdf5-1.8.15-patch1/local/bin
prepend-path LD_LIBRARY_PATH
/home/houssen/Programs/PHDF5/hdf5-1.8.15-patch1/local/lib
prepend-path CMAKE_PREFIX_PATH
/home/houssen/Programs/PHDF5/hdf5-1.8.15-patch1/local/share/cmake
~> module load PHDF5-1.8.15
~> module list
Currently Loaded Modulefiles:
1) CMake-3.3.0 2) PHDF5-1.8.15
~> cmake .
-- The C compiler identification is GNU 4.8.4
-- The CXX compiler identification is GNU 4.8.4
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found HDF5:
/home/houssen/Programs/PHDF5/hdf5-1.8.15-patch1/local/lib/libhdf5.a
(found suitable version "1.8.15", minimum required is "1.8")
-- Configuring done
-- Generating done
-- Build files have been written to: /home/houssen/Downloads
~> cmake -LA | grep HDF
HDF5_CXX_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5c++
HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5cc
HDF5_C_LIBRARY:PATH=/home/houssen/Programs/PHDF5/hdf5-1.8.15-patch1/local/lib/libhdf5.a
HDF5_DIFF_EXECUTABLE:FILEPATH=/home/houssen/Programs/PHDF5/hdf5-1.8.15-patch1/local/bin/h5diff
HDF5_DIR:PATH=/home/houssen/Programs/PHDF5/hdf5-1.8.15-patch1/local/share/cmake
HDF5_Fortran_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5fc
~> cmake -LA
-- Configuring done
-- Generating done
-- Build files have been written to: /home/houssen/Téléchargements
-- Cache values
CMAKE_AR:FILEPATH=/usr/bin/ar
CMAKE_BUILD_TYPE:STRING=
CMAKE_COLOR_MAKEFILE:BOOL=ON
CMAKE_CXX_COMPILER:FILEPATH=/usr/bin/c++
CMAKE_CXX_FLAGS:STRING=
CMAKE_CXX_FLAGS_DEBUG:STRING=-g
CMAKE_CXX_FLAGS_MINSIZEREL:STRING=-Os -DNDEBUG
CMAKE_CXX_FLAGS_RELEASE:STRING=-O3 -DNDEBUG
CMAKE_CXX_FLAGS_RELWITHDEBINFO:STRING=-O2 -g -DNDEBUG
CMAKE_C_COMPILER:FILEPATH=/usr/bin/cc
CMAKE_C_FLAGS:STRING=
CMAKE_C_FLAGS_DEBUG:STRING=-g
CMAKE_C_FLAGS_MINSIZEREL:STRING=-Os -DNDEBUG
CMAKE_C_FLAGS_RELEASE:STRING=-O3 -DNDEBUG
CMAKE_C_FLAGS_RELWITHDEBINFO:STRING=-O2 -g -DNDEBUG
CMAKE_EXE_LINKER_FLAGS:STRING=
CMAKE_EXE_LINKER_FLAGS_DEBUG:STRING=
CMAKE_EXE_LINKER_FLAGS_MINSIZEREL:STRING=
CMAKE_EXE_LINKER_FLAGS_RELEASE:STRING=
CMAKE_EXE_LINKER_FLAGS_RELWITHDEBINFO:STRING=
CMAKE_EXPORT_COMPILE_COMMANDS:BOOL=OFF
CMAKE_INSTALL_PREFIX:PATH=/usr/local
CMAKE_LINKER:FILEPATH=/usr/bin/ld
CMAKE_MAKE_PROGRAM:FILEPATH=/usr/bin/make
CMAKE_MODULE_LINKER_FLAGS:STRING=
CMAKE_MODULE_LINKER_FLAGS_DEBUG:STRING=
CMAKE_MODULE_LINKER_FLAGS_MINSIZEREL:STRING=
CMAKE_MODULE_LINKER_FLAGS_RELEASE:STRING=
CMAKE_MODULE_LINKER_FLAGS_RELWITHDEBINFO:STRING=
CMAKE_NM:FILEPATH=/usr/bin/nm
CMAKE_OBJCOPY:FILEPATH=/usr/bin/objcopy
CMAKE_OBJDUMP:FILEPATH=/usr/bin/objdump
CMAKE_RANLIB:FILEPATH=/usr/bin/ranlib
CMAKE_SHARED_LINKER_FLAGS:STRING=
CMAKE_SHARED_LINKER_FLAGS_DEBUG:STRING=
CMAKE_SHARED_LINKER_FLAGS_MINSIZEREL:STRING=
CMAKE_SHARED_LINKER_FLAGS_RELEASE:STRING=
CMAKE_SHARED_LINKER_FLAGS_RELWITHDEBINFO:STRING=
CMAKE_SKIP_INSTALL_RPATH:BOOL=NO
CMAKE_SKIP_RPATH:BOOL=NO
CMAKE_STATIC_LINKER_FLAGS:STRING=
CMAKE_STATIC_LINKER_FLAGS_DEBUG:STRING=
CMAKE_STATIC_LINKER_FLAGS_MINSIZEREL:STRING=
CMAKE_STATIC_LINKER_FLAGS_RELEASE:STRING=
CMAKE_STATIC_LINKER_FLAGS_RELWITHDEBINFO:STRING=
CMAKE_STRIP:FILEPATH=/usr/bin/strip
CMAKE_USE_RELATIVE_PATHS:BOOL=OFF
CMAKE_VERBOSE_MAKEFILE:BOOL=FALSE
HDF5_CXX_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5c++
HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5cc
HDF5_C_LIBRARY:PATH=/home/houssen/Programs/PHDF5/hdf5-1.8.15-patch1/local/lib/libhdf5.a
HDF5_DIFF_EXECUTABLE:FILEPATH=/home/houssen/Programs/PHDF5/hdf5-1.8.15-patch1/local/bin/h5diff
HDF5_DIR:PATH=/home/houssen/Programs/PHDF5/hdf5-1.8.15-patch1/local/share/cmake
HDF5_Fortran_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5fc
Le 2015-08-05 13:37, Peter Steinbach a écrit :
Hi Frank,
which cmake version are you using? I checked your code with cmake
3.0.2 under fc21 and it works:
cmake -LA|grep HDF
CMake Error: The source directory
"/home/steinbac/development/cmake_sandbox/hdf5/build" does not appear
to contain CMakeLists.txt.
Specify --help for usage, or press the help button on the CMake GUI.
HDF5_CXX_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5c++
HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5cc
HDF5_C_INCLUDE_DIR:PATH=/usr/include
HDF5_DIFF_EXECUTABLE:FILEPATH=/usr/bin/h5diff
HDF5_DIR:PATH=HDF5_DIR-NOTFOUND
HDF5_Fortran_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5fc
HDF5_IS_PARALLEL:BOOL=FALSE
HDF5_dl_LIBRARY_DEBUG:FILEPATH=HDF5_dl_LIBRARY_DEBUG-NOTFOUND
HDF5_dl_LIBRARY_RELEASE:FILEPATH=/usr/lib64/libdl.so
HDF5_hdf5_LIBRARY_DEBUG:FILEPATH=HDF5_hdf5_LIBRARY_DEBUG-NOTFOUND
HDF5_hdf5_LIBRARY_RELEASE:FILEPATH=/usr/lib64/libhdf5.so
HDF5_m_LIBRARY_DEBUG:FILEPATH=HDF5_m_LIBRARY_DEBUG-NOTFOUND
HDF5_m_LIBRARY_RELEASE:FILEPATH=/usr/lib64/libm.so
HDF5_z_LIBRARY_DEBUG:FILEPATH=HDF5_z_LIBRARY_DEBUG-NOTFOUND
HDF5_z_LIBRARY_RELEASE:FILEPATH=/usr/lib64/libz.so
Best,
Peter
On 08/03/2015 02:19 PM, houssen wrote:
Hello,
I built HDF5 from source with CMake. I need parallel HDF5 so I set
HDF5_ENABLE_PARALLEL=ON in ccmake : libhdf5.settings shows "Parallel
HDF5: ON". So this is OK.
Now with this CMakeLists.txt:
~> more CMakeLists.txt
CMAKE_MINIMUM_REQUIRED ( VERSION 2.8 )
FIND_PACKAGE ( HDF5 1.8 REQUIRED C )
I do not get HDF5_IS_PARALLEL :
~> cmake .
-- Configuring done
-- Generating done
-- Build files have been written to: /home/houssen/Downloads
~> cmake -LA | grep HDF
HDF5_CXX_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5c++
HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5cc
HDF5_C_LIBRARY:PATH=/home/houssen/Programs/PHDF5/hdf5-1.8.15-patch1/local/lib/libhdf5.a
HDF5_DIFF_EXECUTABLE:FILEPATH=/home/houssen/Programs/PHDF5/hdf5-1.8.15-patch1/local/bin/h5diff
HDF5_DIR:PATH=/home/houssen/Programs/PHDF5/hdf5-1.8.15-patch1/local/share/cmake
HDF5_Fortran_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5fc
Why HDF5_IS_PARALLEL is not available?
Franck
_______________________________________________
Hdf-forum is for HDF software users discussion.
[email protected]
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5
_______________________________________________
Hdf-forum is for HDF software users discussion.
[email protected]
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5
_______________________________________________
Hdf-forum is for HDF software users discussion.
[email protected]
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5
