Hello Christian, We are aware of the problem you reported on the Mac OS X 10.10 and we are working on resolving it. As for now, you can temporarily bypass the problem by disabling the optimization.
$ env PROD_CFLAGS=-O0 ./configure $ make $ make check Please let us know if you need further help on this issue. Binh-Minh ________________________________________ From: Hdf-forum <[email protected]> on behalf of Christian Siegert <[email protected]> Sent: Saturday, July 25, 2015 10:06 AM To: [email protected] Subject: [Hdf-forum] Building HDF 4.2.11: “make check” shows segmentation fault caused by hdftest I’m trying to build HDF 4.2.11 from source on Mac OS X 10.10.4. After running “./configure” and “make”, I execute “make check”. At the top it says “All tests were successful.” but at the bottom of the log it ends with: ============================ Testing hdftest /bin/sh: line 1: 5693 Segmentation fault: 11 srcdir="." ./${tname} >> ${log} 2>&1 ---------------------------- hdftest Test Log ---------------------------- Testing create/read/write compressed datasets (tcomp.c) PASSED Testing create/read/write chunked datasets (tchunk.c) PASSED Testing reading of netCDF file using the SDxxx inteface (tnetcdf.c) make[5]: *** [hdftest.chkexe_] Error 1 make[4]: *** [build-check-s] Error 2 make[3]: *** [test] Error 2 make[2]: *** [check-am] Error 2 make[1]: *** [check-recursive] Error 1 make: *** [check-recursive] Error 1 When I run ./hdf-4.2.11/mfhdf/test/hdftest in a terminal I get: Testing create/read/write compressed datasets (tcomp.c) PASSED Testing create/read/write chunked datasets (tchunk.c) PASSED Testing reading of netCDF file using the SDxxx inteface (tnetcdf.c) Segmentation fault: 11 I tried ./configure --disable-netcdf (and also --disable-fortran and --enable-production) but this didn’t solve the problem. Do you get the same error when you try to build from source? How can I fix this? Background story: I want to open an HDF4 file in Java, using GDAL. Whenever I do this, I get a segmentation fault but it isn’t entirely clear what part of the chain (GDAL Java Native Bindings, GDAL, HDF4) is the problem. So not getting a segmentation fault in make check is very important to eliminate a potential error source. _______________________________________________ Hdf-forum is for HDF software users discussion. [email protected] http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org Twitter: https://twitter.com/hdf5 _______________________________________________ Hdf-forum is for HDF software users discussion. [email protected] http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org Twitter: https://twitter.com/hdf5
