Any ideas Allen? I would guess the extra output should not be on those files?
On Thu, Aug 20, 2015 at 11:22 AM, Tiago Macarios <[email protected]> wrote: > Allen, > > I diffed the files it looks like the only difference is that the out files > have errors attached to them, ex: > > *tgroup-2.out ======================================* > HDF5 "tgroup.h5" { > GROUP "/g2" { > GROUP "g2.1" { > GROUP "g2.1.1" { > } > GROUP "g2.1.2" { > } > GROUP "g2.1.3" { > } > } > } > GROUP "/" { > GROUP "g1" { > GROUP "g1.1" { > } > GROUP "g1.2" { > } > } > GROUP "g2" { > GROUP "g2.1" { > GROUP "g2.1.1" { > } > GROUP "g2.1.2" { > } > GROUP "g2.1.3" { > } > } > } > GROUP "g3" { > GROUP "g3.1" { > } > GROUP "g3.2" { > } > GROUP "g3.3" { > } > GROUP "g3.4" { > } > } > } > GROUP "/y" { > } > } > HDF5-DIAG: Error detected in HDF5 (1.8.15-patch1) thread 0: > #000: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5G.c line 467 in > H5Gopen2(): unable to open group > major: Symbol table > minor: Can't open object > #001: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gint.c line 320 in > H5G__open_name(): group not found > major: Symbol table > minor: Object not found > #002: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gloc.c line 430 in > H5G_loc_find(): can't find object > major: Symbol table > minor: Object not found > #003: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gtraverse.c line 861 in > H5G_traverse(): internal path traversal failed > major: Symbol table > minor: Object not found > #004: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gtraverse.c line 641 in > H5G_traverse_real(): traversal operator failed > major: Symbol table > minor: Callback failed > #005: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gloc.c line 385 in > H5G_loc_find_cb(): object 'y' doesn't exist > major: Symbol table > minor: Object not found > h5dump error: unable to open group "/y" > > *tgroup-2.ddl ======================================* > HDF5 "tgroup.h5" { > GROUP "/g2" { > GROUP "g2.1" { > GROUP "g2.1.1" { > } > GROUP "g2.1.2" { > } > GROUP "g2.1.3" { > } > } > } > GROUP "/" { > GROUP "g1" { > GROUP "g1.1" { > } > GROUP "g1.2" { > } > } > GROUP "g2" { > GROUP "g2.1" { > GROUP "g2.1.1" { > } > GROUP "g2.1.2" { > } > GROUP "g2.1.3" { > } > } > } > GROUP "g3" { > GROUP "g3.1" { > } > GROUP "g3.2" { > } > GROUP "g3.3" { > } > GROUP "g3.4" { > } > } > } > GROUP "/y" { > } > } > > > *diff ======================================* > > InputObject > SideIndicator > ----------- > ------------- > HDF5-DIAG: Error detected in HDF5 (1.8.15-patch1) thread 0: > => > #000: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5G.c line 467 in > H5Gopen2(): unable to open group => > major: Symbol table > => > minor: Can't open object > => > #001: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gint.c line 320 in > H5G__open_name(): group not found => > major: Symbol table > => > minor: Object not found > => > #002: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gloc.c line 430 in > H5G_loc_find(): can't find object => > major: Symbol table > => > minor: Object not found > => > #003: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gtraverse.c line 861 in > H5G_traverse(): internal path traversal failed => > major: Symbol table > => > minor: Object not found > => > #004: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gtraverse.c line 641 in > H5G_traverse_real(): traversal operator failed => > major: Symbol table > => > minor: Callback failed > => > #005: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gloc.c line 385 in > H5G_loc_find_cb(): object 'y' doesn't exist => > major: Symbol table > => > minor: Object not found > => > h5dump error: unable to open group "/y" > > On Thu, Aug 20, 2015 at 10:20 AM, Allen Byrne <[email protected]> wrote: > >> So all the failing tests have *.out.err files of 0 bytes which will fail >> the >> compare with the corresponding *.err file. >> Next take a look at the *.out files (they will compare the *.ddl files) >> >> Allen >> >> >> On Thursday, August 20, 2015 09:29:19 AM Tiago Macarios wrote: >> > Hi Allen, >> > >> > Thanks for helping. Most of the *out.err are empty. I zipped all the >> > build\tools\h5dump\testfiles\std\*.err files now. >> > >> > Best, >> > Mac >> > >> > On Thu, Aug 20, 2015 at 8:56 AM, Allen Byrne <[email protected]> wrote: >> > > No those are the expected err files from the source - there should be >> > > *.out.err >> > > files that correspond to the *.out files that are generated from the >> > > tests. >> > > >> > > Allen >> > > >> > > On Thursday, August 20, 2015 08:19:02 AM Tiago Macarios wrote: >> > > > Hi Allen, >> > > > >> > > > *.err files attached. Any ideas? >> > > > >> > > > Thanks! >> > > > >> > > > On Thu, Aug 20, 2015 at 7:28 AM, Allen Byrne <[email protected]> >> wrote: >> > > > > Those are all in the h5dump tools test. Are there any *.err files >> for >> > > > > those >> > > > > tests - in the build/tools/h5dump/std folder? >> > > > > >> > > > > Allen >> > > > > >> > > > > On Wednesday, August 19, 2015 07:54:40 PM Tiago Macarios wrote: >> > > > > > Hi, >> > > > > > >> > > > > > I am trying to build with cmake following this: >> > > > > > https://www.hdfgroup.org/HDF5/release/cmakebuild.html >> > > > > > >> > > > > > but I am having no luck. I am getting failed tests which in turn >> > > >> > > seems >> > > >> > > > > > to >> > > > > > stop the process. Can someone help me? >> > > > > > >> > > > > > Best, >> > > > > > mac >> > > > > > >> > > > > > >> > > > > > ============================================ >> > > > > > >> > > > > > 99% tests passed, 19 tests failed out of 1975 >> > > > > > >> > > > > > Total Test time (real) = 384.89 sec >> > > > > > >> > > > > > The following tests FAILED: >> > > > > > 1443 - H5DUMP-tgroup-2 (Failed) >> > > > > > 1447 - H5DUMP-tdset-2 (Failed) >> > > > > > 1455 - H5DUMP-tattr-3 (Failed) >> > > > > > 1471 - H5DUMP-tslink-D (Failed) >> > > > > > 1493 - H5DUMP-tcomp-3 (Failed) >> > > > > > 1503 - H5DUMP-tall-1 (Failed) >> > > > > > 1537 - H5DUMP-tarray1_big (Failed) >> > > > > > 1567 - H5DUMP-tall-2A (Failed) >> > > > > > 1569 - H5DUMP-tall-2A0 (Failed) >> > > > > > 1571 - H5DUMP-tall-2B (Failed) >> > > > > > 1593 - H5DUMP-tperror (Failed) >> > > > > > 1697 - H5DUMP-tdataregR (Failed) >> > > > > > 1699 - H5DUMP-tattrregR (Failed) >> > > > > > 1722 - H5DUMP-torderlinks1 (Failed) >> > > > > > 1724 - H5DUMP-torderlinks2 (Failed) >> > > > > > 1728 - H5DUMP-textlinksrc (Failed) >> > > > > > 1730 - H5DUMP-textlinkfar (Failed) >> > > > > > 1732 - H5DUMP-textlink (Failed) >> > > > > > 1734 - H5DUMP-filter_fail (Failed) >> > > > > > >> > > > > > CMake Error at CTestScript.cmake:279 (message): >> > > > > > Failed packaging: 1 >> > > > > > >> > > > > > Call Stack (most recent call first): >> > > > > > HDF518config.cmake:134 (include) >> >> >
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