> On Aug 19, 2016, at 8:11 AM, Thompson, Matt (GSFC-610.1)[SCIENCE SYSTEMS AND
> APPLICATIONS INC] <[email protected]> wrote:
>
> On 08/18/2016 02:35 PM, Scot Breitenfeld wrote:
>>
>>> On Aug 18, 2016, at 11:01 AM, Thompson, Matt (GSFC-610.1)[SCIENCE
>>> SYSTEMS AND APPLICATIONS INC] <[email protected]
>>> <mailto:[email protected]>> wrote:
>>>
>>> On 08/16/2016 02:33 PM, Scot Breitenfeld wrote:
>>>> Hi,
>>>>
>>>> I’ve fixed the issue in 1.8 and the fix will be in the next release of
>>>> 1.8, or you can try checking out 1.8 from svn,
>>>>
>>>> https://svn.hdfgroup.uiuc.edu/hdf5/branches/hdf5_1_8
>>>>
>>>> Also, we don’t have access to a NAG compiler, so if you can compile 1.8,
>>>> run the fortran tests (i.e. in the fortran directory, issue “make
>>>> check”), and report back any issues then that would be great.
>>>
>>> Scot,
>>>
>>> I downloaded the 1.8 SVN and ran into the same issue:
>>
>>>
>>>> make[4]: Entering directory
>>>> `/gpfsm/dswdev/mathomp4/Baselibs/TmpBaselibs/GMAO-Baselibs-5_0_2-NAG/src/hdf5-1.8-svn/fortran/test'
>>>> FC tf_F03.lo
>>>> NAG Fortran Compiler Release 6.0(Hibiya) Build 1064
>>>> Error: tf_F03.f90, line 128: Implicit type for SIZEOF in H5_SIZEOF_DP
>>>> Error: tf_F03.f90, line 128: Implicit type for SIZEOF in H5_SIZEOF_SP
>>>> Error: tf_F03.f90, line 128: Implicit type for SIZEOF in H5_SIZEOF_I
>>>> Error: tf_F03.f90, line 128: Implicit type for SIZEOF in H5_SIZEOF_CHR
>>>> Error: tf_F03.f90, line 128: Implicit type for SIZEOF in H5_SIZEOF_CMPD
>>>> [NAG Fortran Compiler pass 1 error termination, 5 errors]
>>>
>>> It looks to me like the SVN tf_F03.f90 is identical to that in 1.8.17.
>>> So this is expected, I suppose.
>>
>> I’m sorry, I did not update the Makefile.in, it should now compile
>> tf_F08.F90 instead.
>
> I did an 'svn update' and, huzzah!, it built. It still dies in the same place
> in the tests though:
>
>> ============================
>> Fortran API: Testing fortranlib_test_F03
>> ============================
>> Fortran API: fortranlib_test_F03 Test Log
>> ============================
>> Runtime Error: Invalid edit descriptor for integer i/o-list item
>> Program terminated by I/O error on internal file
>> ==============================
>> FORTRAN 2003 tests
>> ==============================
>> FORTRANLIB_TEST is linked with HDF5 Library version 1.8 release 18
>>
>> Testing 1-D Array of Compound Datatypes Functionality PASSED
>> Testing 1-D Array of Compound Array Datatypes Functionality PASSED
>> Testing 3-D array by dataset, using C_LOC PASSED
>> Testing writing/reading enum dataset, using C_LOC PASSED
>> Testing enumeration conversions PASSED
>> Testing writing/reading bitfield dataset, using C_LOC PASSED
>> Testing writing/reading opaque datatypes, using C_LOC PASSED
>> Testing writing/reading object references, using C_LOC PASSED
>> Testing writing/reading region references, using C_LOC PASSED
>> Testing writing/reading variable-length datatypes, using C_LOC PASSED
>> Testing writing/reading variable-string datatypes, using C_LOC PASSED
>> Testing variable-string write/read, using h5dwrite_f/h5dread_f PASSED
>> Testing writing/reading string datatypes, using C_LOC PASSED
>> Command terminated by signal 6
>> 0.01user 0.01system 0:00.04elapsed 52%CPU (0avgtext+0avgdata
>> 7380maxresident)k
>> 0inputs+0outputs (0major+5953minor)pagefaults 0swaps
>> make[4]: *** [fortranlib_test_F03.chkexe_] Error 1
>
Some progress, I would need to know the line where this fails.
>
> ****** 1.10 ******
>
>>
>> I think I fixed the issue in trunk, can you try it again? If that does
>> not work then can you send the config.log file. I would be interested in
>> the lines of output from configure:
>>
>> checking if Fortran compiler supports intrinsic SIZEOF... yes
>> checking if Fortran compiler supports intrinsic C_SIZEOF... yes
>> checking if Fortran compiler supports intrinsic STORAGE_SIZE... yes
>> checking if Fortran compiler supports intrinsic module
>> ISO_FORTRAN_ENV... yes
>> checking for Fortran INTEGER KINDs... {1,2,4,8,16}
>> checking for Fortran REAL KINDs... {4,8,10,16}
>> checking for Fortran REALs maximum decimal precision... 33
>> checking sizeof of native KINDS...
>> checking for Fortran INTEGER KINDs... {1,2,4,8,16}
>> checking for Fortran REAL KINDs... {4,8,10,16}
>> checking for Fortran REALs maximum decimal precision... 33
>> checking sizeof of available INTEGER KINDs... {1,2,4,8,16}
>> checking sizeof of available REAL KINDs... {4,8,16,16}
>> checking if Fortran compiler supports intrinsic C_LONG_DOUBLE... yes
>> checking if Fortran C_LONG_DOUBLE is different from C_DOUBLE... yes
>> checking for Fortran interoperable KINDS with C... {4,8,10,16}
>> checking whether we are using the GNU C++ compiler… yes
>
> Well, it died again, but slightly differently:
>
>> make[4]: Entering directory
>> `/gpfsm/dswdev/mathomp4/Baselibs/TmpBaselibs/GMAO-Baselibs-5_0_2-NAG/src/hdf5-1.10-trunk/fortran/src'
>> CC H5match_types.o
>> H5match_types.c: In function ‘main’:
>> H5match_types.c:163:7: warning: unused variable ‘found_long_double’
>> [-Wunused-variable]
>> int found_long_double = 0;
>> ^~~~~~~~~~~~~~~~~
>> CCLD H5match_types
>> ./H5match_types
>> make install-am
>> make[5]: Entering directory
>> `/gpfsm/dswdev/mathomp4/Baselibs/TmpBaselibs/GMAO-Baselibs-5_0_2-NAG/src/hdf5-1.10-trunk/fortran/src'
>> PPFC H5fortran_types.lo
>> libtool: compile: mpifort -I. -I../../src -I../../src -I../../fortran/src
>> -fpp -mismatch_all -c H5fortran_types.F90 -o H5fortran_types.o
>> NAG Fortran Compiler Release 6.0(Hibiya) Build 1064
>> [NAG Fortran Compiler normal termination]
>> PPFC H5f90global.lo
>> libtool: compile: mpifort -I. -I../../src -I../../src -I../../fortran/src
>> -fpp -mismatch_all -c H5f90global.F90 -o H5f90global.o
>> NAG Fortran Compiler Release 6.0(Hibiya) Build 1064
>> [NAG Fortran Compiler normal termination]
>> PPFC H5_ff.lo
>> libtool: compile: mpifort -I. -I../../src -I../../src -I../../fortran/src
>> -fpp -mismatch_all -c H5_ff.F90 -o H5_ff.o
>> NAG Fortran Compiler Release 6.0(Hibiya) Build 1064
>> Error: H5_ff.F90, line 396: Implicit type for FORTRAN_INTEGER_8
>> detected at FORTRAN_INTEGER_8@)
>> Warning: H5_ff.F90, line 424: Symbol FORTRAN_INTEGER_8 referenced but never
>> set
>> [NAG Fortran Compiler pass 1 error termination, 1 error, 1 warning]
>> make[5]: *** [H5_ff.lo] Error 1
>
> Perhaps this is due to NAG's weirdness (kind(0.0d0) is 2, not 8). Here is the
> bit of the configure run, and find attached the config.log:
We tried to avoid the non-standard assumption that KIND = SIZEOF, but obviously
this is still an issue. Unfortunately, this is a little more involved than just
changing a couple lines of code. I will enter a bug report new bug report, as
the old one addressed just the sizeof issue, and hopefully it will be fixed in
the next release. I will try to find a NAG compiler to debug the issues in 1.8
and 1.10.
Thanks,
Scot
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