That is exactly what is happening. Unfortunately I'm not certain of all the details as I don't maintain the install that is provided on the system. I used to maintain my own version, but when the system was updated to BeeGFS it became easier to use the one provided.
In terms of the specific linker call, in a simplified form, it looks like mpicxx (object file list) (other libraries) -L(location of libhdf5.so) -lhdf5 So far as I can tell, the only undefined references are those that include H5P, I'm suspecting that they did not recompile the parallel version of the libraries. On Tue, Nov 22, 2016 at 1:08 PM, Landon Clipp <[email protected]> wrote: > Aaron, > > Undefined references almost always mean that your compiler is not linking > the libraries you need. This is not surprising considering your machine was > recently upgraded. A little bit more information about your environment, > compilation procedures etc would be helpful to determine why your libraries > are not being properly included. > > Regards, > Landon Clipp > > On Mon, Nov 21, 2016 at 9:15 PM, Aaron Friesz <[email protected]> wrote: > >> The machine I work on was recently upgraded. When I compile against the >> HDF5 libraries that are installed on the system (1.18), I get these errors >> when trying to link. Any help with figuring out what is wrong would be >> greatly appreciated. >> >> -- >> Aaron Friesz >> >> >> _______________________________________________ >> Hdf-forum is for HDF software users discussion. >> [email protected] >> http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org >> <https://urldefense.proofpoint.com/v2/url?u=http-3A__lists.hdfgroup.org_mailman_listinfo_hdf-2Dforum-5Flists.hdfgroup.org&d=DgMFaQ&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=Rx9txIqgEINHtVDIDfXdIw&m=aqPxJiCbdUQL5Kxkl4EOchQYc5_Apm8gW_wYitdnLxg&s=MgsqMuu5_8lJd0EDrmVR3kT_2giZR-JX-it2X2aCkag&e=> >> Twitter: https://twitter.com/hdf5 >> <https://urldefense.proofpoint.com/v2/url?u=https-3A__twitter.com_hdf5&d=DgMFaQ&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=Rx9txIqgEINHtVDIDfXdIw&m=aqPxJiCbdUQL5Kxkl4EOchQYc5_Apm8gW_wYitdnLxg&s=-sTb4Ix6jLKp05hJeTt-gGsS_zh4tAnbNmBtQ6VQLNo&e=> >> > > > _______________________________________________ > Hdf-forum is for HDF software users discussion. > [email protected] > https://urldefense.proofpoint.com/v2/url?u=http-3A__lists. > hdfgroup.org_mailman_listinfo_hdf-2Dforum-5Flists.hdfgroup.org&d=DgICAg&c= > clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=Rx9txIqgEINHtVDIDfXdIw&m= > aqPxJiCbdUQL5Kxkl4EOchQYc5_Apm8gW_wYitdnLxg&s=MgsqMuu5_ > 8lJd0EDrmVR3kT_2giZR-JX-it2X2aCkag&e= > Twitter: https://urldefense.proofpoint.com/v2/url?u=https-3A__ > twitter.com_hdf5&d=DgICAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r= > Rx9txIqgEINHtVDIDfXdIw&m=aqPxJiCbdUQL5Kxkl4EOchQYc5_Apm8gW_wYitdnLxg&s=- > sTb4Ix6jLKp05hJeTt-gGsS_zh4tAnbNmBtQ6VQLNo&e= >
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