Hello,
We have a similar issue with the one mentioned here:
http://stackoverflow.com/questions/32077579/exception-appending-dataframe-chunk-with-string-values-to-large-hdf5-file-using
Was there a solution to it please?
5FD_sec2_write
file write failed: time = Tue Aug 18 18:26:17 2015
, filename = 'large_file.h5', file descriptor = 4, errno = 22, error message =
'Invalid argument', buf = 0000000066A40018, total write size = 262095, bytes
this sub-write = 262095, bytes actually written = 18446744073709551615, offset
= 47615949533
The error we are having is:
#000: C:\dev\hdf5-1.8.17\src\H5Dio.c line 271 in H5Dwrite(): can't prepare for
writing data
major: Dataset
minor: Write failed
#001: C:\dev\hdf5-1.8.17\src\H5Dio.c line 347 in H5D__pre_write(): can't
write chunk directly
major: Dataset
minor: Write failed
#002: C:\dev\hdf5-1.8.17\src\H5Dchunk.c line 392 in
H5D__chunk_direct_write(): unable to write raw data to file
major: Dataset
minor: Write failed
#003: C:\dev\hdf5-1.8.17\src\H5Fio.c line 171 in H5F_block_write(): write
through metadata accumulator failed
major: Low-level I/O
minor: Write failed
#004: C:\dev\hdf5-1.8.17\src\H5Faccum.c line 825 in H5F__accum_write(): file
write failed
major: Low-level I/O
minor: Write failed
#005: C:\dev\hdf5-1.8.17\src\H5FDint.c line 260 in H5FD_write(): driver write
request failed
major: Virtual File Layer
minor: Write failed
#006: C:\dev\hdf5-1.8.17\src\H5FDsec2.c line 802 in H5FD_sec2_write(): file
write failed: time = Tue Feb 28 10:00:02 2017
, filename = 'C:\hdf_file.fast5', file descriptor = 4, errno = 22, error
message = 'Invalid argument', buf = 00000000C4F6D950, total write size = 41681,
bytes this sub-write = 41681, bytes actually written = 18446744073709551615,
offset = 142297119656
major: Low-level I/O
minor: Write failed
Thank you,
Ruxandra
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