All,
I'm not sure if this is the place for h5edit help, but I can't find
anywhere better.
The issue I'm having is during compilation where:
/nobackup/gmao_SIteam/Baselibs/ESMA-Baselibs-5.0.3/x86_64-unknown-linux-gnu/ifort_2017.0.098-mpt_2.14r19-gcc_6.3.0/Linux/bin/h5pcc
-DHAVE_CONFIG_H -I. -DpgiFortran
-I/nobackup/gmao_SIteam/Baselibs/ESMA-Baselibs-5.0.3/x86_64-unknown-linux-gnu/ifort_2017.0.098-mpt_2.14r19-gcc_6.3.0/Linux/include/
-I/nobackup/gmao_SIteam/Baselibs/ESMA-Baselibs-5.0.3/x86_64-unknown-linux-gnu/ifort_2017.0.098-mpt_2.14r19-gcc_6.3.0/Linux/include/zlib
-I/nobackup/gmao_SIteam/Baselibs/ESMA-Baselibs-5.0.3/x86_64-unknown-linux-gnu/ifort_2017.0.098-mpt_2.14r19-gcc_6.3.0/Linux/include/szlib
-I/nobackup/gmao_SIteam/Baselibs/ESMA-Baselibs-5.0.3/x86_64-unknown-linux-gnu/ifort_2017.0.098-mpt_2.14r19-gcc_6.3.0/Linux/include/jpeg
-I/nobackup/gmao_SIteam/Baselibs/ESMA-Baselibs-5.0.3/x86_64-unknown-linux-gnu/ifort_2017.0.098-mpt_2.14r19-gcc_6.3.0/Linux/include/hdf5
-I/nobackup/gmao_SIteam/Baselibs/ESMA-Baselibs-5.0.3/x86_64-unknown-linux-gnu/ifort_2017.0.098-mpt_2.14r19-gcc_6.3.0/Linux/include/hdf
-I/nobackup/gmao_SIteam/Baselibs/ESMA-Baselibs-5.0.3/x86_64-unknown-linux-gnu/ifort_2017.0.098-mpt_2.14r19-gcc_6.3.0/Linux/include/uuid
-I/nobackup/gmao_SIteam/Baselibs/ESMA-Baselibs-5.0.3/x86_64-unknown-linux-gnu/ifort_2017.0.098-mpt_2.14r19-gcc_6.3.0/Linux/include/netcdf
-I/nobackup/gmao_SIteam/Baselibs/ESMA-Baselibs-5.0.3/x86_64-unknown-linux-gnu/ifort_2017.0.098-mpt_2.14r19-gcc_6.3.0/Linux/include/udunits2
-I/nobackup/gmao_SIteam/Baselibs/ESMA-Baselibs-5.0.3/x86_64-unknown-linux-gnu/ifort_2017.0.098-mpt_2.14r19-gcc_6.3.0/Linux/include/gsl
-I/nobackup/gmao_SIteam/Baselibs/ESMA-Baselibs-5.0.3/x86_64-unknown-linux-gnu/ifort_2017.0.098-mpt_2.14r19-gcc_6.3.0/Linux/include/antlr
-fPIC -MT parse.o -MD -MP -MF .deps/parse.Tpo -c -o parse.o parse.c
parse.y: In function ‘H5EDITyyparse’:
parse.y:342:53: warning: implicit declaration of function
‘split_object_component’ [-Wimplicit-function-declaration]
source_attribute_part = split_object_component(
source_object_name,
^~~~~~~~~~~~~~~~~~~~~~
parse.y:342:51: warning: assignment makes pointer from integer without a cast
[-Wint-conversion]
source_attribute_part = split_object_component(
source_object_name,
^
parse.y:353:56: warning: assignment makes pointer from integer without a cast
[-Wint-conversion]
destination_attribute_part =
split_object_component( copy_param2_name,
^
parse.y:624:17: warning: implicit declaration of function
‘split_object_attribute’ [-Wimplicit-function-declaration]
if (0 != split_object_attribute(group_name, dataset_name)){
^~~~~~~~~~~~~~~~~~~~~~
parse.y: At top level:
parse.y:1119:8: error: conflicting types for ‘split_object_component’
char * split_object_component ( char *pathname, char **trim_pathname )
^~~~~~~~~~~~~~~~~~~~~~
parse.y:342:53: note: previous implicit declaration of ‘split_object_component’
was here
source_attribute_part = split_object_component(
source_object_name,
^~~~~~~~~~~~~~~~~~~~~~
make[1]: *** [parse.o] Error 1
make[1]: Leaving directory
`/nobackupp9/gmao_SIteam/Baselibs/ESMA-Baselibs-5.0.3/src/h5edit/src'
make: *** [install-recursive] Error 1
In this case, h5pcc is based on gcc 6.3.0:
$ h5pcc --version
gcc (GCC) 6.3.0
Copyright (C) 2016 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
Now on some systems I don't see this, on some I do. Is this a yacc
issue? Once I see a .y file, I'm way out of my league.
Maybe preprocessing? Not sure.
--
Matt Thompson, SSAI, Sr Scientific Programmer/Analyst
NASA GSFC, Global Modeling and Assimilation Office
Code 610.1, 8800 Greenbelt Rd, Greenbelt, MD 20771
Phone: 301-614-6712 Fax: 301-614-6246
http://science.gsfc.nasa.gov/sed/bio/matthew.thompson
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