n 26 June 2017 at 03:42, ashwin .D <winash12 at gmail.com
<http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org>>
wrote:
>* Hello,
*>* I already have an existing installation of HDF5 1.8.17 compiled
*>* with gfortran. Now for another project on the same machine I need to
*>* compile with PGI compilers i.e. pgcc , pgc++and pgf90. The installation
*>* directory will be separate as well i.e. /opt/local/lib and
*>* /opt/local/include.
*>>* This is how I try to build hdf5
*>>* CPPFLAGS=/opt/local/include CXXFLAGS=/opt//local/include
*>* LDFLAGS=/opt//local/lib CC=pgcc CXX=pgc++ FC=pgf90 F77=pgf77 ./configure
*>* --prefix=/opt/local --with-zlib=/opt/local --enable-fortran --enable-cxx.
*>>* and when I try doing this I get this error message -
*>>* checking for a BSD-compatible install... /usr/bin/install -c
*>* checking whether build environment is sane... yes
*>* [...]
*>checking for gcc... pgcc
>* checking whether the C compiler works... no
*>* configure: error: in `/home//hdf5-1.8.17':
*>* configure: error: C compiler cannot create executables
*>* See `config.log' for more details <<<<<<<<<<<<<<<<<<<<
*>>* Any suggestions on how to build will be appreciated.
*>>>Your flags settings need "-I" or "-L" as appropriate.
>If that does't solve your problem, it might help if you provide the OS and
>version as well as the compiler version.
>Someone on the list may have advice for your particular platform.
>It would also be helpful if you could post relevant "more details" from
>the config.log file.
Sorry for asking the question. In this command line for configure
how would I add -I and -L
*CPPFLAGS=/opt/local/include CXXFLAGS=/opt/local/include
** LDFLAGS=/opt/local/lib CC=pgcc CXX=pgc++ FC=pgf90 F77=pgf77 ./configure
** --prefix=/opt/local --with-zlib=/opt/local --enable-fortran --enable-cxx.
*
The compiler version is
pgcc 17.4-0 64-bit target on x86-64 Linux -tp haswell
PGI Compilers and Tools
Copyright (c) 2017, NVIDIA CORPORATION. All rights reserved.
OS version as given by uname Ubuntu 16.04 LTS
Linux a-Vostro-3800 4.4.0-81-generic #104-Ubuntu SMP Wed Jun 14 08:17:06
UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by HDF5 configure 1.8.17, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ ./configure --prefix=/opt/local --with-zlib=/opt/local --enable-fortran
## --------- ##
## Platform. ##
## --------- ##
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/usr/bin/uname -p = unknown
/bin/uname -X = unknown
/bin/arch = unknown
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown
PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /usr/sbin
PATH: /usr/bin
PATH: /sbin
PATH: /bin
PATH: /usr/games
PATH: /usr/local/games
PATH: /opt/pgi/linux86-64/17.4/bin
## ----------- ##
## Core tests. ##
## ----------- ##
configure:3074: checking for a BSD-compatible install
configure:3142: result: /usr/bin/install -c
configure:3153: checking whether build environment is sane
configure:3208: result: yes
configure:3359: checking for a thread-safe mkdir -p
configure:3398: result: /bin/mkdir -p
configure:3405: checking for gawk
configure:3435: result: no
configure:3405: checking for mawk
configure:3421: found /usr/bin/mawk
configure:3432: result: mawk
configure:3443: checking whether make sets $(MAKE)
configure:3465: result: yes
configure:3494: checking whether make supports nested variables
configure:3511: result: yes
configure:3647: checking whether make supports nested variables
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configure:3687: checking whether to enable maintainer-specific portions of Makefiles
configure:3696: result: no
configure:3745: checking build system type
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configure:3779: checking host system type
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as_mkdir_p='mkdir -p "$as_dir"'
as_myself=./configure
as_nl='
'
as_save_IFS='
'
as_test_x='test -x'
as_tr_cpp='eval sed '\''y%*abcdefghijklmnopqrstuvwxyz%PABCDEFGHIJKLMNOPQRSTUVWXYZ%;s%[^_abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789]%_%g'\'''
as_tr_sh='eval sed '\''y%*+%pp%;s%[^_abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789]%_%g'\'''
as_unset=as_fn_unset
as_var=MAILPATH
bindir='${exec_prefix}/bin'
build=x86_64-unknown-linux-gnu
build_cpu=x86_64
build_os=linux-gnu
build_vendor=unknown
cache_file=/dev/null
cross_compiling=no
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
enable_fortran=yes
exec_prefix=NONE
host=x86_64-unknown-linux-gnu
host_cpu=x86_64
host_os=linux-gnu
host_vendor=unknown
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /home/a/mp/hdf5-1.8.17/bin/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
no_create=
no_recursion=
oldincludedir=/usr/include
pdfdir='${docdir}'
prefix=/opt/local
program_prefix=NONE
program_suffix=NONE
program_transform_name=s,x,x,
psdir='${docdir}'
saved_user_CFLAGS=
saved_user_CPPFLAGS=/opt/local/include
saved_user_CXXFLAGS=/opt//local/include
saved_user_FCFLAGS=
saved_user_LDFLAGS=/opt//local/lib
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
silent=
site=
srcdir=.
subdirs=
sysconfdir='${prefix}/etc'
target=
verbose=
with_zlib=/opt/local
x_includes=NONE
x_libraries=NONE
configure:3863: result: done
configure:3912: checking if basename works
configure:3918: result: yes
configure:3923: checking if xargs works
configure:3929: result: yes
configure:3937: checking for cached host
configure:3944: result: none
configure:3998: checking for config x86_64-unknown-linux-gnu
configure:4006: result: no
configure:3998: checking for config x86_64-unknown-linux-gnu
configure:4006: result: no
configure:3998: checking for config unknown-linux-gnu
configure:4006: result: no
configure:3998: checking for config unknown-linux-gnu
configure:4006: result: no
configure:3998: checking for config x86_64-linux-gnu
configure:4006: result: no
configure:3998: checking for config x86_64-linux-gnu
configure:4006: result: no
configure:3998: checking for config x86_64-unknown
configure:4006: result: no
configure:3998: checking for config linux-gnu
configure:4002: result: found
configure:4018: checking for config ./config/site-specific/host-a-Vostro-3800
configure:4026: result: no
configure:4103: checking for gcc
configure:4130: result: pgcc
configure:4359: checking for C compiler version
configure:4368: pgcc --version >&5
pgcc 17.4-0 64-bit target on x86-64 Linux -tp haswell
PGI Compilers and Tools
Copyright (c) 2017, NVIDIA CORPORATION. All rights reserved.
configure:4379: $? = 0
configure:4368: pgcc -v >&5
Export PGI=/opt/pgi
pgcc-Warning-No files to process
configure:4379: $? = 0
configure:4368: pgcc -V >&5
pgcc 17.4-0 64-bit target on x86-64 Linux -tp haswell
PGI Compilers and Tools
Copyright (c) 2017, NVIDIA CORPORATION. All rights reserved.
configure:4379: $? = 0
configure:4368: pgcc -qversion >&5
pgcc-Error-Unknown switch: -qversion
configure:4379: $? = 1
configure:4399: checking whether the C compiler works
configure:4421: pgcc /opt/local/include /opt//local/lib conftest.c >&5
conftest.c:
/usr/bin/ld: cannot find /opt/local/include: File format not recognized
/usr/bin/ld: cannot find /opt//local/lib: File format not recognized
configure:4425: $? = 2
configure:4463: result: no
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "HDF5"
| #define PACKAGE_TARNAME "hdf5"
| #define PACKAGE_VERSION "1.8.17"
| #define PACKAGE_STRING "HDF5 1.8.17"
| #define PACKAGE_BUGREPORT "[email protected]"
| #define PACKAGE_URL ""
| #define PACKAGE "hdf5"
| #define VERSION "1.8.17"
| /* end confdefs.h. */
|
| int
| main ()
| {
|
| ;
| return 0;
| }
configure:4468: error: in `/home/a/mp/hdf5-1.8.17':
configure:4470: error: C compiler cannot create executables
See `config.log' for more details
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_build=x86_64-unknown-linux-gnu
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=set
ac_cv_env_CC_value=pgcc
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=set
ac_cv_env_CPPFLAGS_value=/opt/local/include
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=set
ac_cv_env_CXXFLAGS_value=/opt//local/include
ac_cv_env_CXX_set=set
ac_cv_env_CXX_value=pgc++
ac_cv_env_FCFLAGS_set=
ac_cv_env_FCFLAGS_value=
ac_cv_env_FC_set=set
ac_cv_env_FC_value=pgf90
ac_cv_env_LDFLAGS_set=set
ac_cv_env_LDFLAGS_value=/opt//local/lib
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_host=x86_64-unknown-linux-gnu
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AWK=mawk
ac_cv_prog_ac_ct_CC=pgcc
ac_cv_prog_make_make_set=yes
am_cv_make_support_nested_variables=yes
hdf5_cv_host=x86_64-unknown-linux-gnu
## ----------------- ##
## Output variables. ##
## ----------------- ##
ACLOCAL='${SHELL} /home/a/mp/hdf5-1.8.17/bin/missing aclocal-1.14'
ADD_PARALLEL_FILES=''
AMDEPBACKSLASH=''
AMDEP_FALSE=''
AMDEP_TRUE=''
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_CFLAGS=''
AM_CPPFLAGS=''
AM_CXXFLAGS=''
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY='0'
AM_FCFLAGS=''
AM_LDFLAGS=''
AM_MAKEFLAGS=''
AM_V='$(V)'
AR=''
AUTOCONF='${SHELL} /home/a/mp/hdf5-1.8.17/bin/missing autoconf'
AUTOHEADER='${SHELL} /home/a/mp/hdf5-1.8.17/bin/missing autoheader'
AUTOMAKE='${SHELL} /home/a/mp/hdf5-1.8.17/bin/missing automake-1.14'
AWK='mawk'
BUILD_ALL_CONDITIONAL_FALSE=''
BUILD_ALL_CONDITIONAL_TRUE=''
BUILD_CXX_CONDITIONAL_FALSE=''
BUILD_CXX_CONDITIONAL_TRUE=''
BUILD_FORTRAN_CONDITIONAL_FALSE=''
BUILD_FORTRAN_CONDITIONAL_TRUE=''
BUILD_HDF5_HL_CONDITIONAL_FALSE=''
BUILD_HDF5_HL_CONDITIONAL_TRUE=''
BUILD_PARALLEL_CONDITIONAL_FALSE=''
BUILD_PARALLEL_CONDITIONAL_TRUE=''
BUILD_SHARED_SZIP_CONDITIONAL_FALSE=''
BUILD_SHARED_SZIP_CONDITIONAL_TRUE=''
BYTESEX=''
CC='pgcc'
CCDEPMODE=''
CC_VERSION=''
CFLAGS=' '
CLEARFILEBUF=''
CODESTACK='no'
CONFIG_DATE=''
CONFIG_MODE=''
CONFIG_USER=''
CPP=''
CPPFLAGS=' /opt/local/include'
CXX='pgc++'
CXXCPP=''
CXXDEPMODE=''
CXXFLAGS=' /opt//local/include'
CXX_VERSION=''
CYGPATH_W='echo'
DEBUG_PKG=''
DEFAULT_API_VERSION=''
DEFS=''
DEPDIR=''
DEPRECATED_SYMBOLS=''
DIRECT_VFD='no'
DIRECT_VFD_CONDITIONAL_FALSE=''
DIRECT_VFD_CONDITIONAL_TRUE=''
DLLTOOL=''
DSYMUTIL=''
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP=''
EXEEXT=''
EXTERNAL_FILTERS=''
F9XMODEXT=''
F9XMODFLAG=''
F9XSUFFIXFLAG=''
FC2003=''
FC='pgf90'
FCFLAGS=' '
FCFLAGS_f90=''
FCLIBS=''
FC_VERSION=''
FGREP=''
FORTRAN_2003_CONDITIONAL_F_FALSE=''
FORTRAN_2003_CONDITIONAL_F_TRUE=''
FORTRAN_DEFAULT_REALisDBLE_F_FALSE=''
FORTRAN_DEFAULT_REALisDBLE_F_TRUE=''
FORTRAN_HAVE_C_SIZEOF_FALSE=''
FORTRAN_HAVE_C_SIZEOF_TRUE=''
FORTRAN_HAVE_SIZEOF_FALSE=''
FORTRAN_HAVE_SIZEOF_TRUE=''
FORTRAN_HAVE_STORAGE_SIZE_FALSE=''
FORTRAN_HAVE_STORAGE_SIZE_TRUE=''
FORTRAN_SHARED_CONDITIONAL_FALSE=''
FORTRAN_SHARED_CONDITIONAL_TRUE=''
FSEARCH_DIRS=''
GREP=''
H5_CFLAGS=' -c99 -Minform=inform'
H5_CPPFLAGS=''
H5_CXXFLAGS=''
H5_FCFLAGS=''
H5_FORTRAN_SHARED=''
H5_LDFLAGS=''
H5_VERSION=''
HADDR_T=''
HAVE_DMALLOC='no'
HAVE_FORTRAN_2003=''
HAVE_PTHREAD=''
HAVE_SHARED_CONDITIONAL_FALSE=''
HAVE_SHARED_CONDITIONAL_TRUE=''
HDF5_HL='yes'
HDF5_INTERFACES=''
HDF_CXX='no'
HDF_FORTRAN2003='no'
HDF_FORTRAN='no'
HID_T=''
HL=''
HL_FOR=''
HSIZE_T=''
HSSIZE_T=''
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
INSTRUMENT=''
INSTRUMENT_LIBRARY=''
LD=''
LDFLAGS=' /opt//local/lib'
LIBOBJS=''
LIBS=''
LIBTOOL=''
LIPO=''
LL_PATH=''
LN_S=''
LTLIBOBJS=''
LT_STATIC_EXEC=''
MAINT='#'
MAINTAINER_MODE_FALSE=''
MAINTAINER_MODE_TRUE='#'
MAKEINFO='${SHELL} /home/a/mp/hdf5-1.8.17/bin/missing makeinfo'
MANIFEST_TOOL=''
MKDIR_P='/bin/mkdir -p'
MPE='no'
NM=''
NMEDIT=''
OBJDUMP=''
OBJECT_NAMELEN_DEFAULT_F=''
OBJEXT=''
OTOOL64=''
OTOOL=''
PACKAGE='hdf5'
PACKAGE_BUGREPORT='[email protected]'
PACKAGE_NAME='HDF5'
PACKAGE_STRING='HDF5 1.8.17'
PACKAGE_TARNAME='hdf5'
PACKAGE_URL=''
PACKAGE_VERSION='1.8.17'
PARALLEL=''
PATH_SEPARATOR=':'
PERL=''
RANLIB=''
ROOT=''
RUNPARALLEL=''
RUNSERIAL=''
R_INTEGER=''
R_LARGE=''
SEARCH=''
SED=''
SET_MAKE=''
SHELL='/bin/bash'
SIZE_T=''
STATIC_EXEC='no'
STATIC_SHARED=''
STRICT_FORMAT_CHECKS=''
STRIP=''
TESTPARALLEL=''
THREADSAFE='no'
TIME=''
TR=''
TRACE_API=''
UNAME_INFO='Linux a-Vostro-3800 4.4.0-81-generic #104-Ubuntu SMP Wed Jun 14 08:17:06 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux'
USE_FILTER_DEFLATE=''
USE_FILTER_SZIP=''
USE_PLUGINS_CONDITIONAL_FALSE=''
USE_PLUGINS_CONDITIONAL_TRUE=''
USINGMEMCHECKER=''
VERSION='1.8.17'
WORDS_BIGENDIAN=''
ac_ct_AR=''
ac_ct_CC='pgcc'
ac_ct_CXX=''
ac_ct_DUMPBIN=''
ac_ct_FC=''
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE=''
am__fastdepCC_FALSE=''
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE=''
am__fastdepCXX_TRUE=''
am__include=''
am__isrc=''
am__leading_dot='.'
am__nodep=''
am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
bindir='${exec_prefix}/bin'
build='x86_64-unknown-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='unknown'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
enable_shared=''
enable_static=''
exec_prefix='NONE'
host='x86_64-unknown-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='unknown'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /home/a/mp/hdf5-1.8.17/bin/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/opt/local'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''
## ----------- ##
## confdefs.h. ##
## ----------- ##
/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.17"
#define PACKAGE_STRING "HDF5 1.8.17"
#define PACKAGE_BUGREPORT "[email protected]"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.17"
configure: exit 77
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