Hello,
I am having trouble with a code that uses hdf5. The code is written in
fortran90 it consists of a main program(proccor.f90) and a
module(module_correlation_functions.f90).
After using the makefile to compile the code, I get the following error:
gfortran -O3 -c module_correlation_functions.f90 -I/usr/local/hdf5/include
-L/usr/local/hdf5/lib /usr/local/hdf5/lib/libhdf5hl_fortran.a
/usr/local/hdf5/lib/libhdf5_hl.a /usr/local/hdf5/lib/libhdf5_fortran.a
/usr/local/hdf5/lib/libhdf5.a -lz -ldl -lm -Wl,-rpath
-Wl,/usr/local/hdf5/lib
module_correlation_functions.f90:1583:68:
call h5dread_f(dset_id,H5T_IEEE_F32BE,x,npart,error)
1
Error: There is no specific subroutine for the generic ‘h5dread_f’ at (1)
module_correlation_functions.f90:1588:68:
call h5dread_f(dset_id,H5T_IEEE_F32BE,y,npart,error)
1
Error: There is no specific subroutine for the generic ‘h5dread_f’ at (1)
module_correlation_functions.f90:1593:68:
call h5dread_f(dset_id,H5T_IEEE_F32BE,z,npart,error)
1
Error: There is no specific subroutine for the generic ‘h5dread_f’ at (1)
makefile:38: recipe for target 'module_correlation_functions.o' failed
make: *** [module_correlation_functions.o] Error 1
The makelife I used to compile the code includes the location of the hdf5
library :
LIBSHDF=-I/usr/local/hdf5/include -L/usr/local/hdf5/lib
/usr/local/hdf5/lib/libhdf5hl_fortran.a /usr/local/hdf5/lib/libhdf5_hl.a
/usr/local/hdf5/lib/libhdf5_fortran.a /usr/local/hdf5/lib/libhdf5.a -lz
-ldl -lm -Wl,-rpath -Wl,/usr/local/hdf5/lib
FCFLAGS = -O3
# List of executables to be built within the package
PROGRAMS = procorr
# "make" builds all
all: $(PROGRAMS)
procorr.o: module_correlation_functions.o
procorr: module_correlation_functions.o
# ======================================================================
# And now the general rules, these should not require modification
# ======================================================================
# General rule for building prog from prog.o; $^ (GNU extension) is
# used in order to list additional object files on which the
# executable depends
%: %.o
$(FC) $(FCFLAGS) -o $@ $^ $(LIBSHDF)
# General rules for building prog.o from prog.f90 or prog.F90; $< is
# used in order to list only the first prerequisite (the source file)
# and not the additional prerequisites such as module or include files
%.o: %.f90
$(FC) $(FCFLAGS) -c $^ $(LIBSHDF)
# Utility targets
.PHONY: clean veryclean
clean:
rm -f *.o *.mod *.MOD
rm -f .last_fourier_transform
rm -f cdm_redshift0_*
rm -f *~ $(PROGRAMS)
The call hdf5 statement is located on the module file
(module_correlation_functions.f90)
I am probably doing something wrong on the makefile because I used the same
hdf5 library location to compile another fortran90+hdf5 code without any
trouble. Could please help me ?
The gfortran version used is: GNU Fortran (Ubuntu 5.4.0-6ubuntu1~16.04.4)
5.4.0
and the hdf5 version is: hdf5-1.8.19 compiled with the enable fortran
option.
Kind Regards,
--
Guido
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