Dear HDFers,
I am building a parallel version of HDF5 sub-version 1.10.1. I went with the
cmake path. The build is on a P8 machine with RHEL, Xl compilers and Spectrum
MPI. The cmake configure step goes fine, but my compilation crashes around 93%
with the following error:
/path/to/hdf/source/fortran/src/H5f90global.F90", line 43.7: 1514-219 (S)
Unable to access module symbol file for module h5fortran_types. Check path and
file permissions of file. Use association not done for this module.
1501-511 Compilation failed for file H5f90global.F90.
make[3]: *** [fortran/src/CMakeFiles/hdf5_fortran-static.dir/H5f90global.F90.o]
Error 1
make[2]: ***
[fortran/src/CMakeFiles/hdf5_fortran-static.dir/H5f90global.F90.o.provides]
Error 2
make[1]: *** [fortran/src/CMakeFiles/hdf5_fortran-static.dir/all] Error 2"
After rerunning with VERBOSE=2, I nailed down the compilation issue to the line
below. Apologies for cluster specific paths, but I am afraid I will
accidentally remove important information so I am not editing anything:
/opt/ibm/xlf/15.1.5/bin/xlf90_r \
-WF,-DNDEBUG -WF,-D_FILE_OFFSET_BITS=64 \
-WF,-D_LARGEFILE64_SOURCE -WF,-D_LARGEFILE_SOURCE \
-I/gpfs/cds/local/package_build/build/rrs59-build/build/hdf/build_1.10.1_xl
\
-I/gpfs/cds/local/package_build/build/rrs59-build/build/hdf/1.10.1/src \
-I/gpfs/cds/local/package_build/build/rrs59-build/build/hdf/build_1.10.1_xl/bin
\
-I/gpfs/paragon/local/apps/ibm/spectrum_mpi/10.1.0/include \
-I/gpfs/cds/local/package_build/build/rrs59-build/build/hdf/build_1.10.1_xl/fortran
\
-I/gpfs/cds/local/package_build/build/rrs59-build/build/hdf/build_1.10.1_xl/fortran/src
\
-I/gpfs/cds/local/package_build/build/rrs59-build/build/hdf/1.10.1/fortran/src \
-I/gpfs/cds/local/package_build/build/rrs59-build/build/hdf/build_1.10.1_xl/src
\
-qfloat=nans:subnormals -qmaxmem=-1 -qnosave -qsclk=micro -qsmp=omp \
-qarch=pwr8 -qtune=pwr8:smt8 -qthreaded -qhalt=e \
-qmoddir=../../bin/static -qpic \
-c
/gpfs/cds/local/package_build/build/rrs59-build/build/hdf/1.10.1/fortran/src/H5f90global.F90
\
-o CMakeFiles/hdf5_fortran-static.dir/H5f90global.F90.o
Please let me know if you have any advice. I also didn't manage to build it
with GCC although for completely different errors. I will need C and Fortran
interfaces, so my cmake build directory was configured with:
cmake \
-DCMAKE_INSTALL_PREFIX:PATH=${PREFIX} \
-DBUILD_SHARED_LIBS:BOOL=ON \
-DHDF5_ENABLE_PARALLEL:BOOL=ON \
-DHDF5_BUILD_FORTRAN:BOOL=ON \
-DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=OFF \
-DHDF5_BUILD_CPP_LIB:BOOL=OFF \
../${version}
Many thanks,
Robert
--
Dr Robert Sawko
Research Staff Member, IBM
Daresbury Laboratory
Keckwick Lane, Warrington
WA4 4AD
United Kingdom
--
Email (IBM): [email protected]
Email (STFC): [email protected]
Phone (office): +44 (0) 1925 60 3967
Phone (mobile): +44 778 830 8522
Profile page:
http://researcher.watson.ibm.com/researcher/view.php?person=uk-RSawko
--Unless stated otherwise above:
IBM United Kingdom Limited - Registered in England and Wales with number
741598.
Registered office: PO Box 41, North Harbour, Portsmouth, Hampshire PO6 3AU
_______________________________________________
Hdf-forum is for HDF software users discussion.
[email protected]
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5
