Hi Scot, Thanks for the suggestions. It turns out that the problem is that the mpi.mod files are compiled with a different version of gcc than the one I was using. I was able to make the change and can now configure and make hdf5. I am running "make check-s" and "make check-p" now.
Thanks very much for the suggestion. Best, Paul Paul Guillermo Arias, Ph.D. Associate Research Scientist Rutgers Discovery Informatics Institute On Mon, Jan 29, 2018 at 10:28 AM, Paul Arias <[email protected]> wrote: > Thank you Scot for the note. > > I have attached the file here, and am also reviewing it. > > Best, > Paul > > > > > Paul Guillermo Arias, Ph.D. > Associate Research Scientist > Rutgers Discovery Informatics Institute > > On Mon, Jan 29, 2018 at 10:20 AM, Scot Breitenfeld <[email protected]> > wrote: > >> Can you send the config.log file, it should contain the details of the >> error. >> >> Scot >> >> On Jan 26, 2018, at 3:57 PM, Paul Arias <[email protected]> wrote: >> >> Hello, >> >> I am trying to compile HDF5 (1.8.20) with openmpi, fortran (gnu). >> >> This is the error message that I get near the end: >> >> checking whether a simple MPI-IO C program can be linked... yes >> checking whether a simple MPI-IO Fortran program can be linked... no >> configure: error: unable to link a simple MPI-IO Fortran program >> >> This is my configuration script: >> ------- >> export CC=/usr/mpi/gcc/openmpi-1.10.4-hfi/bin/mpicc >> export FC=/usr/mpi/gcc/openmpi-1.10.4-hfi/bin/mpifort >> export F77=/usr/mpi/gcc/openmpi-1.10.4-hfi/bin/mpifort >> export F90=/usr/mpi/gcc/openmpi-1.10.4-hfi/bin/mpifort >> >> export FFLAGS="-I/usr/mpi/gcc/openmpi-1.10.4/include/" >> export CFLAGS="-I/usr/mpi/gcc/openmpi-1.10.4/include/" >> export LDFLAGS="-L/usr/mpi/gcc/openmpi-1.10.4/lib64/" >> export LIBS="-lmpi" >> >> ./configure --enable-parallel --enable-fortran >> --prefix=/home1/pgarias/software/hdf5-mpich3.2-gcc4.9.4 >> ---- >> >> I'm wondering what I might be missing when attempting to configure HDF5 >> with mpi-io. >> >> Thanks you for your assistance! >> Paul >> >> >> >> >> Paul Guillermo Arias, Ph.D. >> Associate Research Scientist >> Rutgers Discovery Informatics Institute >> _______________________________________________ >> Hdf-forum is for HDF software users discussion. >> [email protected] >> http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org >> Twitter: https://twitter.com/hdf5 >> >> >> >> _______________________________________________ >> Hdf-forum is for HDF software users discussion. >> [email protected] >> http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org >> Twitter: https://twitter.com/hdf5 >> > >
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