I found the core problem. It comes from this command:

XZIP="/c/fpc/bin/i386-win32/zip"  ./gst-tool.exe gst-package --kernel-dir
"./kernel" --image gst.im --dist --copy --all-files --destdir ""
--target-dir="c:/gst/share/smalltalk" --srcdir "." ./packages.xml

which is an interpretation of:

$(GST_PACKAGE) --dist --copy --all-files \
          --destdir "$(DESTDIR)" --target-dir="$(pkgdatadir)" \
          --srcdir "$(srcdir)" $(srcdir)/packages.xml

in install-data-hook target of the top level Makefile. That command gives
first output:

mkdir "E:\Sources\smalltalk-3.2.4\--target-dir=c:"

which is really strange as it would be invalid directory name. After a few
experiments (without looking at the source code) I believe there's something
wrong with --target-dir and --destdir handler.

Here's the output of configure and make:
http://forum.world.st/file/n3461949/gst.zip gst.zip 

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