we are using a Sakura DRS2000 and we are 3 x 3 minutes in xylene and we have
been keeping it fresh. The staining is good now but we still see the crystals.
If it were paraffin we should see unstained spots on the slide I think.

I have gone to an aqueous 1% HCl today after hematoxylin for regression and that seems to be cleaning them up on most of the slides. I cleaned out some of the plumbing and cleaned some calcium out of the pipes.

We are using "Harris hematoxylin" that we purchase. We have a tried different counterstains but it seems to
make no difference.

We are using a Sakura tissue processor for overnight processing of cassettes. the embedding is going good and we get nice flat thin sections. We are fixing tissues with neutral phosphate buffered formalin but still see some formalin pigment. We are cleaning that up with picric acid in etoh. We find we still need that and the formalin pigment is brown to dark brown. These problem crystals are round irregular to rhomboidal some times sort of large and flat about the size of a cell and they are clear. I thought they were formalin pigment at first and fiddled with the Picric Acid, and tried Ammonia in Alcohol to get rid of formalin pigment and finally
decided that it was not formalin pigment.

I thought it might be something from Scott's tap water (Mg++) so i dropped that and tried bluing with NH4+ and it didnt help any. I tried blueing just with tap water. Nice result but still the crystals.

The aqueous HCl seems to be working and is not harming the nuclei so I may have a sort of solution
and am calling it calcium crystals in the water until I know better.

I may look for some sort of filter to put in the water line.

E Wayne Johnson DVM
Enruikang Ag Tech
MOA Feed Industry Centre
China Agriculture University
Beijing

On 8/21/2012 7:51 PM, Debra Siena wrote:
could it be paraffin?
Debbie Siena HT(ASCP)QIHC
Technical Manager | StatLab Medical Products
407 Interchange St. | McKinney, TX 75071
Direct: 972-436-1010  x229 | Fax: 972-436-1369
dsi...@statlab.com | www.statlab.com


----- Original Message -----
From: e...@pigsqq.org [mailto:e...@pigsqq.org]
Sent: Tuesday, August 21, 2012 05:46 AM
To: Debra Siena
Subject: Re: [Histonet] annoying crystals on sections

We just now ran the statlab version protocol from StatLab's website, using an 
alcoholic eosin.  No doubt that gives a stronger brighter red stain.  However 
we still see those crystals!

We are suspecting a water problem.  I have been dismantling some of the 
plumbing and getting some Ca crystals out of the pipes.

We are manually coverslipping.

  -------Original Message-------
  From: Debra Siena<dsi...@statlab.com>
  To: 'e...@pigsqq.org'<e...@pigsqq.org>
  Subject: Re: [Histonet] annoying crystals on sections
  Sent: Aug 21 '12 07:46

Is your eosin alcoholic or aqueous? What is your staining protocol and what reagents are you using? This information would be most helpful. Also are the sections paraffin embedded and routinely processed in tissue processor? Debbie Siena HT(ASCP)QIHC
  Technical Manager | StatLab Medical Products
  407 Interchange St. | McKinney, TX 75071
  Direct: 972-436-1010  x229 | Fax: 972-436-1369
  dsi...@statlab.com | www.statlab.com


  ----- Original Message -----
  From: E. Wayne Johnson [mailto:e...@pigsqq.org]
  Sent: Monday, August 20, 2012 06:20 PM
  To: histonet@lists.utsouthwestern.edu<histonet@lists.utsouthwestern.edu>
  Subject: [Histonet] annoying crystals on sections

  We are having problems with crystals precipitated on our slides which
  are H&E stains on tissues from pigs.
  Tissues are fixed in buffered formalin.  We had trouble months ago with
  formalin pigment and we had resolved
  that by using ammonia in EtOH or picric acid in EtOH.  Sometimes we
  receive fixed samples from the field that are
  not buffered but presently all of our tissues are fixed in neutral
  phosphate buffered formalin.

  We moved the Sakura autostainer to a different location under a fume
  hood on a
  different floor of the building to get the solvent odor out of our work
  area.
  Immediately we began to see a tremendous degradation in slide quality
  due to what we initially thought was formalin pigment.
  We have changed all of the solutions and all of the stains.  We find
  that if we use Milli-q water instead of tap water for
  rinsing (done by hand in that case) we dont see the crystals, but the
  eosin staining quality is not acceptable after rinsing in the acidic
  (ph ~5) Milli-Q water.

  Our tap water is neutral to slightly alkaline and is very hard with calcium.

  We do all sorts of tissues for diagnosis of pig diseases.  Sometimes the
  slides are quite acceptable but sometimes particularly
  when looking at small intestine, the crystals are very annoying.  The
  crystals occur randomly on the slide except that there is a
  tendency for them to be centered on nuclei particularly in intestinal
  epithelium.  The crystals are birefringent in polarized light but
  seem to be generally clear not dark like the formalin pigment we had
  seen before.  Neither ammonia nor picric acid remove these,
  and now if we use alcoholic ammonia to treat the slides, the slides come
  out too blue.  Our slides are cut at 4 to 5 microns.

  Brain has the least problem, small intestine seems worst.

  We have gone back and cut some blocks that previously stained
  beautifully with no pigment or precipitate problems
  and those slides also now have the same problem, either crystals if
  washed with tap water, or poor eosin staining if rinsed with MilliQ water.

  Our next step is to examine the slides microscopically at every step and
  try to find at which step the problem is occurring.

  Any thoughts or similar experiences?

  E. Wayne Johnson, DVM
  Enruikang AgTech
  MOA Feed Industry Centre
  Beijing

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