Hi Josh, That cpan command should be done from the horae install directory. Saying
perl -MCPAN -e 'install Bundle::XXX' is looking for the file named XXX.pm (which simply contains a list of Perl modules) in the directory Bundle/. I think that if it can't find that, then it goes to look on-line. Cheers, --Matt On Fri, Sep 17, 2010 at 3:24 PM, Joshua Kas <joshua.j....@gmail.com> wrote: > Hi, > I'm trying to install horae on RHEL5 and I'm having trouble getting the > prerequisites from CPAN. IFEFFIT installed fine, but when I try to install > ARTEMIS/ATHENA I have the following problem: > > verrocchio.phys #] perl -MCPAN -e 'install Bundle::XasPerlBundle' > CPAN: Storable loaded ok > Going to read /CPAN/Metadata > Database was generated on Fri, 17 Sep 2010 18:28:36 GMT > Warning: Cannot install Bundle::XasPerlBundle, don't know what it is. > Try the command > > i /Bundle::XasPerlBundle/ > > to find objects with matching identifiers. > > This was after becoming root, then copying the CPAN/MyConfig.pm file to > ~/.cpan/CPAN/. > I am using the mose recent version of the horae tarball, i.e., horae-070. > I'm out of ideas for now. > Thanks very much for any help. > Josh Kas > > On Fri, Sep 17, 2010 at 10:00 AM, > <ifeffit-requ...@millenia.cars.aps.anl.gov> wrote: >> >> Send Ifeffit mailing list submissions to >> ifef...@millenia.cars.aps.anl.gov >> >> To subscribe or unsubscribe via the World Wide Web, visit >> http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit >> or, via email, send a message with subject or body 'help' to >> ifeffit-requ...@millenia.cars.aps.anl.gov >> >> You can reach the person managing the list at >> ifeffit-ow...@millenia.cars.aps.anl.gov >> >> When replying, please edit your Subject line so it is more specific >> than "Re: Contents of Ifeffit digest..." >> >> >> Today's Topics: >> >> 1. Re: Bkg removal problem (Alfred Hummer) >> 2. Mathematical expressions for the path parameters in Fitting >> (sum...@barc.gov.in) >> 3. Re: Mathematical expressions for the path parameters in >> Fitting (Shelly Kelly) >> 4. Re: Mathematical expressions for the path parameters in >> Fitting (Brandon Reese) >> >> >> ---------------------------------------------------------------------- >> >> Message: 1 >> Date: Thu, 16 Sep 2010 19:58:53 +0200 >> From: Alfred Hummer <alfred.hum...@univie.ac.at> >> To: ifeffit@millenia.cars.aps.anl.gov >> Subject: Re: [Ifeffit] Bkg removal problem >> Message-ID: <4c925add.90...@univie.ac.at> >> Content-Type: text/plain; charset=ISO-8859-1; format=flowed >> >> >> Thx for the detailed answer. Helped me a lot. >> Also tested it with other programs using smoothed splines, leading to >> similar results. >> >> And you are right, I don't expect a peak at about 1A in the FT. The >> first peak at 1.5A in the FT should represent a mixed 1st shell of 3O/3N >> atoms at about 2A distance. >> >> best regards Alfred >> >> >> Am 15.09.2010 19:00, schrieb ifeffit-requ...@millenia.cars.aps.anl.gov: >> > Send Ifeffit mailing list submissions to >> > ifeffit@millenia.cars.aps.anl.gov >> > >> > To subscribe or unsubscribe via the World Wide Web, visit >> > http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit >> > or, via email, send a message with subject or body 'help' to >> > ifeffit-requ...@millenia.cars.aps.anl.gov >> > >> > You can reach the person managing the list at >> > ifeffit-ow...@millenia.cars.aps.anl.gov >> > >> > When replying, please edit your Subject line so it is more specific >> > than "Re: Contents of Ifeffit digest..." >> > >> > >> > Today's Topics: >> > >> > 1. Re: Bkg removal problem (Bruce Ravel) >> > >> > >> > ---------------------------------------------------------------------- >> > >> > Message: 1 >> > Date: Tue, 14 Sep 2010 14:07:55 -0400 >> > From: Bruce Ravel<bra...@bnl.gov> >> > To: XAFS Analysis using Ifeffit<ifeffit@millenia.cars.aps.anl.gov> >> > Subject: Re: [Ifeffit] Bkg removal problem >> > Message-ID:<201009141407.55193.bra...@bnl.gov> >> > Content-Type: Text/Plain; charset="iso-8859-1" >> > >> > >> > Alfred, >> > >> > I certainly encourage you to look at Shelly's book chapter. It's very >> > useful. >> > >> > The question you ask is one that we hear frequently on this mailing >> > list. I don't mean anything bad by saying that -- in fact, it's an >> > excellent question that every practitioner of XAS needs to come to >> > terms with early on in his or her XAS career. Indeed, I am pleased >> > that you are insightful enough to recognize your confusion and wise >> > enough to ask for help. >> > >> > That said, I am a bit weary of answering questions about Rbkg on the >> > mailing list. Yours ain't the first! ;-) >> > >> > Rather than answering here, I decided to write up a wiki page on the >> > topic. That way, I'll have something to point to the next time >> > someone asks about Rbkg. >> > >> > Here it is: >> > http://xafs.org/TheoryAnalysis/BackgroundRemovalWithAutobk >> > >> > Hope it helps, >> > B >> > >> > >> > On Friday 10 September 2010 10:25:50 am Shelly Kelly wrote: >> >> Hi Alfred: >> >> >> >> You should take a look at my book chapter. I go through a lot of >> >> details on how to remove the background. If you want a copy just send >> >> me an email directly and I'll send you a pdf. >> >> >> >> Cheers, >> >> Shelly >> >> ex...@netzero.com >> >> >> >> On Fri, Sep 10, 2010 at 8:42 AM, Alfred Hummer >> >> >> >> <alfred.hum...@univie.ac.at> wrote: >> >>> Hello, >> >>> >> >>> Currently I am working on a Ga XAS spectrum. >> >>> I'm trying to extract the EXAFS data but I'm not sure if the >> >>> background >> >>> function is right, or how to set the right values. >> >>> >> >>> I played around with different setting for kmin and Rbkg. >> >>> So far I know that Rbkg defines the cutoff for the bkg frequencies in >> >>> the >> >>> FT optimization and setting it to high leads to loss in information, >> >>> as >> >>> more high frequencies are included in the bkg. >> >>> >> >>> I also read that it is advisable to exclude strong white lines from >> >>> the >> >>> spline range (increasing kmin?). Would this a strategy in my case? >> >>> >> >>> I attached the project file. >> >>> >> >>> Maybe someone has a clue. The more I tried the bigger my uncertainty. >> >>> >> >>> best regards >> >>> >> >>> Alfred >> >>> >> >>> >> >>> _______________________________________________ >> >>> Ifeffit mailing list >> >>> Ifeffit@millenia.cars.aps.anl.gov >> >>> http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit >> >> >> >> _______________________________________________ >> >> Ifeffit mailing list >> >> Ifeffit@millenia.cars.aps.anl.gov >> >> http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit >> >> >> > >> >> >> ------------------------------ >> >> Message: 2 >> Date: Fri, 17 Sep 2010 11:31:34 +0530 >> From: sum...@barc.gov.in >> To: ifeffit@millenia.cars.aps.anl.gov >> Subject: [Ifeffit] Mathematical expressions for the path parameters in >> Fitting >> Message-ID: >> <edb6390523394cc867a1b7e12aa03d81.squir...@bts.barc.gov.in> >> Content-Type: text/plain;charset=UTF-8 >> >> Hello, >> In EXAFS data modeling carried out by fitting excercise, we develop >> mathematical expressions for different path parametrs as functions of a >> smaller set of fitting parameters that can be adjusted to achieve to best >> fit to the data. I am carrying out EXAFS analysis of Eu(III) sorbed on >> different environmentally relevent mineral oxides. In conection of this i >> also analysed some reference standard compounds. In developing expression >> for different path parameters, though i developed the expressions using my >> own understanding and taking help from one of Shelly's tutorial regarding >> SnO2 case, i am not confident. Basically SS2, and deltaE expressions >> puzzle me. >> Could someone help me in understanding basic approach in developing their >> expressions(for reference Eu2O3 structure could be taken). >> Regards, >> Sumit >> >> >> >> >> >> ------------------------------ >> >> Message: 3 >> Date: Fri, 17 Sep 2010 10:40:14 -0500 >> From: Shelly Kelly <dr.sdke...@gmail.com> >> To: XAFS Analysis using Ifeffit <ifeffit@millenia.cars.aps.anl.gov> >> Subject: Re: [Ifeffit] Mathematical expressions for the path >> parameters in Fitting >> Message-ID: >> <aanlktim40rlmwfrfm1jn0becdx7mm7lthqmw_xu=j...@mail.gmail.com> >> Content-Type: text/plain; charset=ISO-8859-1 >> >> Hi Sumit: >> >> There are a lot of different ways to constrain the EXAFS parameters in >> a fitting model. Mostly they are determined by physically meaningful >> relationships or through trial and error of "what works". I just sent >> you my book chapter and you will find detailed discussion on many of >> the common constraints in there. Another good place to look is in the >> literature to find out what people have done for systems similar to >> yours. >> >> HTH, >> Shelly >> >> On Fri, Sep 17, 2010 at 1:01 AM, <sum...@barc.gov.in> wrote: >> > Hello, >> > In EXAFS data modeling carried out by fitting excercise, we develop >> > mathematical expressions for ?different path parametrs as functions of a >> > smaller set of fitting parameters that can be adjusted to achieve to >> > best >> > fit to the data. I am carrying out EXAFS analysis of Eu(III) sorbed on >> > different environmentally relevent mineral oxides. In conection of this >> > i >> > also analysed some reference standard compounds. In developing >> > expression >> > for different path parameters, though i developed the expressions using >> > my >> > own ?understanding and taking help from one of Shelly's tutorial >> > regarding >> > SnO2 case, i am not confident. Basically SS2, and deltaE expressions >> > puzzle me. >> > Could someone help me in understanding basic approach in developing >> > their >> > expressions(for reference Eu2O3 structure could be taken). >> > Regards, >> > Sumit >> > >> > >> > >> > _______________________________________________ >> > Ifeffit mailing list >> > Ifeffit@millenia.cars.aps.anl.gov >> > http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit >> > >> >> >> >> ------------------------------ >> >> Message: 4 >> Date: Fri, 17 Sep 2010 10:54:21 -0600 >> From: Brandon Reese <bjre...@gmail.com> >> To: XAFS Analysis using Ifeffit <ifeffit@millenia.cars.aps.anl.gov> >> Subject: Re: [Ifeffit] Mathematical expressions for the path >> parameters in Fitting >> Message-ID: >> <aanlktikqg0l=-qwp_ex51xsuoyvn7_jzvesh5o9ls...@mail.gmail.com> >> Content-Type: text/plain; charset="iso-8859-1" >> >> Hi Shelly, >> >> I am also looking into different ways to constrain my EXAFS fits. If you >> wouldn't mind, I would also be very interested in a copy of your book >> chapter. >> >> Thanks, >> Brandon >> >> On Fri, Sep 17, 2010 at 9:40 AM, Shelly Kelly <dr.sdke...@gmail.com> >> wrote: >> >> > Hi Sumit: >> > >> > There are a lot of different ways to constrain the EXAFS parameters in >> > a fitting model. Mostly they are determined by physically meaningful >> > relationships or through trial and error of "what works". I just sent >> > you my book chapter and you will find detailed discussion on many of >> > the common constraints in there. Another good place to look is in the >> > literature to find out what people have done for systems similar to >> > yours. >> > >> > HTH, >> > Shelly >> > >> > On Fri, Sep 17, 2010 at 1:01 AM, <sum...@barc.gov.in> wrote: >> > > Hello, >> > > In EXAFS data modeling carried out by fitting excercise, we develop >> > > mathematical expressions for different path parametrs as functions of >> > > a >> > > smaller set of fitting parameters that can be adjusted to achieve to >> > > best >> > > fit to the data. I am carrying out EXAFS analysis of Eu(III) sorbed on >> > > different environmentally relevent mineral oxides. In conection of >> > > this i >> > > also analysed some reference standard compounds. In developing >> > > expression >> > > for different path parameters, though i developed the expressions >> > > using >> > my >> > > own understanding and taking help from one of Shelly's tutorial >> > regarding >> > > SnO2 case, i am not confident. Basically SS2, and deltaE expressions >> > > puzzle me. >> > > Could someone help me in understanding basic approach in developing >> > > their >> > > expressions(for reference Eu2O3 structure could be taken). >> > > Regards, >> > > Sumit >> > > >> > > >> > > >> > > _______________________________________________ >> > > Ifeffit mailing list >> > > Ifeffit@millenia.cars.aps.anl.gov >> > > http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit >> > > >> > >> > _______________________________________________ >> > Ifeffit mailing list >> > Ifeffit@millenia.cars.aps.anl.gov >> > http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit >> > >> -------------- next part -------------- >> An HTML attachment was scrubbed... >> URL: >> <http://millenia.cars.aps.anl.gov/pipermail/ifeffit/attachments/20100917/8b65f237/attachment.html> >> >> ------------------------------ >> >> _______________________________________________ >> Ifeffit mailing list >> Ifeffit@millenia.cars.aps.anl.gov >> http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit >> >> >> End of Ifeffit Digest, Vol 91, Issue 16 >> *************************************** > > > _______________________________________________ > Ifeffit mailing list > Ifeffit@millenia.cars.aps.anl.gov > http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit > > _______________________________________________ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit