Hello, I am creating a minimum spanning tree (MST) with i-graph. For some
reason, I seem to get a different MST diagram (nodes in different order) each
time I run it. For example, sometimes the primary tree node is say "Jon K.".
Other times, it could be "Larry Z." Could any help with what I am doing wrong?
Here is the code: library(igraph)
tab <- read.csv("NewJam12.csv")
tab <- tab[,-1] g <- graph.adjacency(as.matrix(tab), weighted=TRUE)
V(g)$label <- V(g)$name mst <- as.undirected(minimum.spanning.tree(g))
lay <- layout.reingold.tilford(mst, root=which.max(degree(mst))-1)
lay <- cbind(lay[,2], lay[,1]) # rotate
x11(width=20, height=10)
plot(mst, layout=lay, vertex.size= 5, vertex.size2=15,
vertex.shape="circle", asp=FALSE,
vertex.label.cex=0.5, vertex.color="green")
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