Okay, to answer my own question I went on and used niter=10000 (my graph is 14736 nodes and 153834 edges, weighted, self loops and double edges removed) - I generated 1000 simulated graphs this way. Only, the rewired graphs have some NA in the adjacency matrix - also reported in http://stackoverflow.com/questions/21179746/how-do-you-rewire-a-weighted-network-using-igraph-in-r. Is this expected somehow? I used "simple" option in rewire.

Best,
Sal

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