Hi,
Just tried the way you told. But it is giving the resultant matrix in form
of
[,1] [,2]
[1,] Integer,3 Integer,3
[2,] Integer,3 Integer,3 in your example. This is not giving the result as
1 2 3 1 2 3 3 2 1 3 2 1 as this.
On Sun, Jul 5, 2015 at 7:07 PM, Gábor Csárdi <[email protected]> wrote:
> Yes, create a matrix from a list, and then put the igraph results in it. R
> matrices can be lists, eg.
>
> a <- list(1:3, 1:3, 3:1, 3:1)
> matrix(a, 2, 2)
>
> Gabor
>
> On Sun, Jul 5, 2015 at 3:34 PM, seema aswani <[email protected]>
> wrote:
>
>> Hi gabor,
>> Thank you for response.
>> I have worked with it but it is just giving a vector. But i want i want
>> the matrix which display the shortest path sequences. Like if there are two
>> nodes A and B and the shortest path between them is A C B. Then i want the
>> matrix of displaying shortest path as a single matrix element with A C B.
>> Is there any way to do this..??
>>
>> On Sun, Jul 5, 2015 at 6:57 PM, Gábor Csárdi <[email protected]>
>> wrote:
>>
>>> You can convert an igraph.vs to vertex names with `as_ids`, and vertex
>>> ids with `as.vector`.
>>>
>>> Gabor
>>>
>>> On Sun, Jul 5, 2015 at 3:22 PM, seema aswani <[email protected]>
>>> wrote:
>>>
>>>> Hi ,
>>>> Thanks for the response.
>>>> I don't want the matrix of shortest path lengths i want the matrix
>>>> which display the shortest path sequences. Like if there are two nodes A
>>>> and B and the shortest path between them is A C B. Then i want the matrix
>>>> of displaying shortest path as a single matrix element with A C B. Is there
>>>> any way to do this..??
>>>>
>>>> On Sun, Jul 5, 2015 at 6:45 PM, Chris Watson <[email protected]>
>>>> wrote:
>>>>
>>>>> Are you using the 'shortest.paths' function? It returns a matrix
>>>>>
>>>>> On Sun, Jul 5, 2015 at 7:25 AM, seema aswani <[email protected]>
>>>>> wrote:
>>>>>
>>>>>> Hi ,
>>>>>> I am using igraph package for finding shortest paths between two
>>>>>> nodes of graph. As my dataset is having biological information about
>>>>>> Protein Protein Interaction. The names are of type string and those are
>>>>>> the
>>>>>> names of proteins. I have names of 11 proteins and i found the shortest
>>>>>> path between all those 11 proteins pairwise. As a result of for loop i am
>>>>>> getting the list of shortest paths and the vertex sequences as a class
>>>>>> igraph.vs. I want to display this result in matrix of 11*11. How can i do
>>>>>> this ?? Can any one help ??
>>>>>>
>>>>>> Thanks
>>>>>>
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>>>>>>
>>>>>>
>>>>>
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>>>>>
>>>>
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