Hi Mark, On Wed, 22 Jan 2014, Mark Hiner wrote:
> I noticed today that on line 60 of > CompositeImage<http://trac.imagej.net/browser/imagej/src/main/java/ij/CompositeImage.java?rev=5edb0e269f08a596c926bc171d516f7b3f85631f>, > if the stack size is less than 7, the stack is converted to channels > (coupled with lines 68-69). ... and the only way to fix it is to do it manually after constructing the CompositeImage. I actually stumbled over this part of the ImageJ 1.x source code quite a couple of times. Unfortunately, it is too late to fix it because people and plugins already rely on that surprising behavior. > This causes bizarre & inconsistent behavior (especially to scientist > users), e.g. when stitching if there are more than 7 slices everything > looks great, and less than 7 all of a sudden you get back a colored > channel stack. > > It's not clear to me why this code is necessary.. perhaps it should only > be executed if the mode is set to COMPOSITE? That's a good idea! How about adding the workaround to call setDimensions() *directly* after constructing (and saving the correct dimensions before) in any case? Ciao, Dscho _______________________________________________ ImageJ-devel mailing list [email protected] http://imagej.net/mailman/listinfo/imagej-devel
