Hi Harri, thank you, the latest Fiji works! The composite image is completely black, > but that could be just a scaling issue. Or did it look better for you?
Yeah it looked the same for me.. but the number of planes looks accurate. :) I suspect it is just a scaling issue. So now I should get to the real work and learn the ImgLib2 API and convert > my existing script :) > Good luck! Let us know if you have any more troubles! Thanks again for the feedback, - Mark On Fri, Feb 28, 2014 at 4:24 AM, Harri Jäälinoja < [email protected]> wrote: > On 27/02/14 20:01, Mark Hiner wrote: > >> These datasets definitely look worse from the script than Fiji/IJ2, which >> is reasonable since they aren't composited or autoscaled or anything... but >> they do look correct to me and opened without error. >> >> Anyway, I hope the latest Fiji works for you. Give it a try and let me >> know if you run into any more problems. >> >> Thank you for your persistence! >> > > Hi Mark, > > thank you, the latest Fiji works! The composite image is completely black, > but that could be just a scaling issue. Or did it look better for you? > > I'll keep using Fiji for running the scripts from now on, I don't see any > benefit in managing the dependencies myself now that you got it working. > > So now I should get to the real work and learn the ImgLib2 API and convert > my existing script :) > > Best, > > Harri > > -- > __________________________________________________ > Harri Jäälinoja > Light Microscopy Unit > Institute of Biotechnology, University of Helsinki > http://www.biocenter.helsinki.fi/bi/lmu/ > +358 9 191 59370 fax +358 9 191 59366 > >
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