If I have a stack with ROIs that are associated with the slices, then
show ROI correctly shows each ROI in the correct slice.
However, if I then use the ROI Manager properties button ot change the
ROI color (eg, from red to blue) then all of the ROIs get moved to a
single slice.
Here is a macro to demonstrates this:
run("T1 Head (16-bits)");
setAutoThreshold("Default dark");
run("Analyze Particles...", "display clear add stack");
roiManager("Show All without labels");
resetThreshold;
RoiManager.associateROIsWithSlices(true);
RoiManager.setGroup(0);
RoiManager.setPosition(1);
roiManager("Set Color", "blue");
roiManager("Set Line Width", 0);
roiManager("Show None");
roiManager("Show All");
setSlice(1);
--
--aryeh
Aryeh Weiss
Faculty of Engineering
Bar Ilan University
+972-3-5317638
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