Hi Wayne
Thank you for your reply.
Since I was doing this in python, I did the following
impList = []
for path in sorted(paths):
impList.append(ImagePlus(path))
stackImp = ImagesToStack.run(impList)
where paths is a list of image files in some directory. This uses
memory, but I have enough memory to handle it.
Best regards
--aryeh
On 08/05/2024 7:46 pm, Wayne Rasband wrote:
Hi Aryeh,
You can use a simple macro like the following to open a folder of images that
differ in size as a stack. There is no significant increase in time or memory
usage when using batch mode.
setBatchMode(true);
dir = getDir("Choose a Directory ");
File.openSequence(dir, " open");
run("Images to Stack", "method=[Copy (top-left)] use");
setBatchMode(false);
-wayne
On May 6, 2024, at 4:41 AM, Aryeh Weiss<[email protected]> wrote:
Import image sequence is invoked when I drag and drop a directory containing
images into ImageJ.
One problem that I have is that it assumes all of the image are the same size
as the first image. Therefore, it will only import images of that size, and
ignore all of the others, with an error message that the expected size was not
found.
One the other hand, the Images to Stacks command will ask how to adjust the
images (centered, cropped, etc) and then create the stack.
Can this capability be added to the FileOpener class ?
The workaround is to load up a list of ImagePlus and then send that to
ImagesToStack, but that is less convenient, and may require more memory since
the list of ImagePlus must first be loaded, and then made into a stack.
Thanks in advance for considering this request.
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--aryeh
Aryeh Weiss
Faculty of Engineering
Bar Ilan University
+972-3-5317638
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