Hi Aryeh,
Did you install the collection via the "update site" Morphology?
I have the jar file in the same place as you and it works (linux, Java 8).
Maybe remove it and reinstalling it again via:
Help>Update...>Manage Update Sites>Morphology
Hope this helps
Gabriel
On 21/04/2025 07:11, Aryeh Weiss wrote:
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I encountered a strange problem using the morphology_collection of
Gabriel Landini.
I got a class not found error for the classes included in
morphology_collection.jar.
This file is in $FIJI_HOME/plugins/Morphology , together the many *.ijm
scripts that are part of Gabriel's morphology collection.
The workaround was to copy the morphology_collection.jar file to the
$FIJI_HOME/jars directory.
I tried this with my current installation of FIJI that runs with java
21, and a fresh installation that runs with java 8, and experiences the
same behavior each time.
Is there an option that determines how far down the directory tree the
program looks to find classes?
tnx in advance
--aryeh
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Aryeh Weiss
Faculty of Engineering
Bar Ilan University
Ramat Gan 52900 Israel
Ph: 972-3-5317638
FAX: 972-3-7384051
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