Greetings,
This may or may-not be related, but when changing a slice label using
imp.getStack(),setSliceLabel(string,int) the displayed slice label does
not change, even when using imp.repaintWindow(); albeit the documentation
implies but does not specifically state that repaitWindow would update the
label.
Fred
On Wed, January 21, 2026 7:25 am, Gluender wrote:
> Dear experts,
>
> in certain cases there seems to be a discrepancy between the
> slice/channel sequence of a hyperstack and the slice/channel label naming.
>
> Attached please find a stack "stack.tif" consisting of six slices that
> stand for two z-positions and three colours. When opening as *virtual*
> stack and applying "Stack to Hyperstack..." to this stack with setting
>
> Order: xyzct
> Channels 3
> Slices 2
> Frames 1
>
> the result is the attached hyperstack "hyperstack-V.tif".
>
> Corresponding ImageJ-macro:
> path=File.openDialog("choose file \"stack.tif\"") ;
> run("TIFF Virtual Stack...","open="+path);
> run("Stack to Hyperstack...","channels=3 slices=2 frames=1");
> Stack.setDisplayMode("color");
> exit();
>
> The resulting hyperstack shows the *correct sequence* of slices and
> colours but the names of slice/channel *labels are discrepant* (see the
> attached screen-shot "example-view").
>
> The effect does *not* occur, if "Stack to Hyperstack..." is applied to
> the real stack, i.e. not to the virtual stack.
>
> Could someone please confirm and perhaps even remedy this strange
> behaviour?
>
> Regards
>
> Herbie
>
>
>
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>
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