Darius,
I'm embarrassed to keep asking for help on this, but I feel we've gone
so far we must nearly have it figured out; to abandon now would waste
all the effort we've already put into it.
I think there is a problem with the PERSON_TYPE.PATIENT line. When I
run...
def concept =
org.openmrs.api.context.Context.getConceptService().getConcept(6407);
java.util.Collections.singletonList(concept)
return new Result(0)
...the results are as expected, with no error.
When I try the similar logic of...
def concept =
org.openmrs.api.context.Context.getConceptService().getConcept(6407);
java.util.Collections.singletonList(org.openmrs.util.PERSON_TYPE.PATIENT
)
return new Result(0)
...it gives the following error...
Hl7inQueue.queueList.errorMessage.header:
groovy.lang.MissingPropertyException: No such property: org for class:
org.openmrs.module.logic.rule.GroovyRule1 Show/Hide Error Details
------ groovy.lang.MissingPropertyException: No such property: org for
class: org.openmrs.module.logic.rule.GroovyRule1 at
org.codehaus.groovy.runtime.ScriptBytecodeAdapter.unwrap(ScriptBytecodeA
dapter.java:49) at
org.codehaus.groovy.runtime.callsite.GetEffectivePogoPropertySite.getPro
perty(GetEffectivePogoPropertySite.java:71) at
org.codehaus.groovy.runtime.callsite.AbstractCallSite.callGroovyObjectGe
tProperty(AbstractCallSite.java:241) at
org.openmrs.module.logic.rule.GroovyRule1.eval(script1316466520984239894
648.groovy:11) at
org.openmrs.logic.impl.LogicContextImpl.eval(LogicContextImpl.java:194)
at
org.openmrs.logic.impl.LogicServiceImpl.eval(LogicServiceImpl.java:212)
at
org.openmrs.logic.impl.LogicServiceImpl.eval(LogicServiceImpl.java:202)
at
org.openmrs.logic.impl.LogicServiceImpl.eval(LogicServiceImpl.java:235)
at sun.reflect.GeneratedMethodAccessor1176.invoke(Unknown Source) at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessor
Impl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(
AopUtils.java:309) at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinp
oint(ReflectiveMethodInvocation.java:183) at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Ref
lectiveMethodInvocation.java:150) at
org.springframework.transaction.interceptor.TransactionInterceptor.invok
e(TransactionInterceptor.java:110) at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Ref
lectiveMethodInvocation.java:172) at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAo
pProxy.java:202) at $Proxy143.eval(Unknown Source) at
sun.reflect.GeneratedMethodAccessor1176.invoke(Unknown Source) at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessor
Impl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(
AopUtils.java:309) at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinp
oint(ReflectiveMethodInvocation.java:183) at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Ref
lectiveMethodInvocation.java:150) at
org.springframework.transaction.interceptor.TransactionInterceptor.invok
e(TransactionInterceptor.java:110) at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Ref
lectiveMethodInvocation.java:172) at
org.openmrs.aop.LoggingAdvice.invoke(LoggingAdvice.java:114) at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Ref
lectiveMethodInvocation.java:172) at
org.springframework.aop.framework.adapter.MethodBeforeAdviceInterceptor.
invoke(MethodBeforeAdviceInterceptor.java:50) at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Ref
lectiveMethodInvocation.java:172) at
org.springframework.aop.framework.adapter.MethodBeforeAdviceInterceptor.
invoke(MethodBeforeAdviceInterceptor.java:50) at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Ref
lectiveMethodInvocation.java:172) at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAo
pProxy.java:202) at $Proxy144.eval(Unknown Source) at
sun.reflect.GeneratedMethodAccessor1176.invoke(Unknown Source) at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessor
Impl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(
AopUtils.java:309) at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinp
oint(ReflectiveMethodInvocation.java:183) at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Ref
lectiveMethodInvocation.java:150) at
org.springframework.transaction.interceptor.TransactionInterceptor.invok
e(TransactionInterceptor.java:110) at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Ref
lectiveMethodInvocation.java:172) at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAo
pProxy.java:202) at $Proxy144.eval(Unknown Source) at
org.openmrs.logic.web.controller.LogicFormController.runTest(LogicFormCo
ntroller.java:82) at
sun.reflect.GeneratedMethodAccessor1340.invoke(Unknown Source) at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessor
Impl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at
org.springframework.web.bind.annotation.support.HandlerMethodInvoker.inv
okeHandlerMethod(HandlerMethodInvoker.java:176) at
org.springframework.web.servlet.mvc.annotation.AnnotationMethodHandlerAd
apter.invokeHandlerMethod(AnnotationMethodHandlerAdapter.java:426) at
org.springframework.web.servlet.mvc.annotation.AnnotationMethodHandlerAd
apter.handle(AnnotationMethodHandlerAdapter.java:414) at
org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherS
ervlet.java:790) at
org.springframework.web.servlet.DispatcherServlet.doService(DispatcherSe
rvlet.java:719) at
org.springframework.web.servlet.FrameworkServlet.processRequest(Framewor
kServlet.java:644) at
org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet
.java:560) at
javax.servlet.http.HttpServlet.service(HttpServlet.java:637) at
javax.servlet.http.HttpServlet.service(HttpServlet.java:717) at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Applica
tionFilterChain.java:290) at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilt
erChain.java:206) at
org.openmrs.module.web.filter.ForcePasswordChangeFilter.doFilter(ForcePa
sswordChangeFilter.java:65) at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Applica
tionFilterChain.java:235) at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilt
erChain.java:206) at
org.openmrs.module.web.filter.ModuleFilterChain.doFilter(ModuleFilterCha
in.java:76) at
org.openmrs.module.web.filter.ModuleFilter.doFilter(ModuleFilter.java:58
) at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Applica
tionFilterChain.java:235) at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilt
erChain.java:206) at
org.openmrs.web.filter.OpenmrsFilter.doFilterInternal(OpenmrsFilter.java
:112) at
org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequ
estFilter.java:76) at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Applica
tionFilterChain.java:235) at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilt
erChain.java:206) at
org.springframework.orm.hibernate3.support.OpenSessionInViewFilter.doFil
terInternal(OpenSessionInViewFilter.java:198) at
org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequ
estFilter.java:76) at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Applica
tionFilterChain.java:235) at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilt
erChain.java:206) at
org.openmrs.web.filter.StartupFilter.doFilter(StartupFilter.java:83) at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Applica
tionFilterChain.java:235) at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilt
erChain.java:206) at
org.openmrs.web.filter.StartupFilter.doFilter(StartupFilter.java:83) at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Applica
tionFilterChain.java:235) at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilt
erChain.java:206) at
org.openmrs.web.filter.StartupFilter.doFilter(StartupFilter.java:83) at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Applica
tionFilterChain.java:235) at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilt
erChain.java:206) at
org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(
CharacterEncodingFilter.java:88) at
org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequ
estFilter.java:76) at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Applica
tionFilterChain.java:235) at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilt
erChain.java:206) at
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValv
e.java:233) at
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValv
e.java:191) at
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java
:128) at
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java
:102) at
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.
java:109) at
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:2
93) at
org.apache.coyote.http11.Http11AprProcessor.process(Http11AprProcessor.j
ava:859) at
org.apache.coyote.http11.Http11AprProtocol$Http11ConnectionHandler.proce
ss(Http11AprProtocol.java:574) at
org.apache.tomcat.util.net.AprEndpoint$Worker.run(AprEndpoint.java:1527)
at java.lang.Thread.run(Thread.java:619) ------
I tried using null in place of
"java.util.Collections.singletonList(org.openmrs.util.PERSON_TYPE.PATIEN
T)" when passing it into getObservations() but that didn't work either.
Is there any hope?
Thanks,
James
From: [email protected] [mailto:[email protected]] On
Behalf Of Darius Jazayeri
Sent: Monday, September 19, 2011 11:48 AM
To: [email protected]
Subject: Re: [OPENMRS-IMPLEMENTERS] Auto-Incrementing Numeric
Observation
James,
What you're actually trying to do is to call this method:
List<Obs> getObservations(List<Person> whom, List<Encounter> encounters,
List<Concept> questions, List<Concept> answers, List<PERSON_TYPE>
personTypes, List<Location> locations, List<String> sort, Integer
mostRecentN, Integer obsGroupId, Date fromDate, Date toDate, boolean
includeVoidedObs)
So the call should be:
def concept =
org.openmrs.api.Context.getConceptService().getConcept(6047);
def obs = getObservations(
null, // all patients
null, // all encounters
java.util.Collections.singletonList(concept), // just this one
concept as question
null, // don't specify any coded answers
java.util.Collections.singletonList(org.openmrs.util.PERSON_TYPE.PATIENT
), // only obs belonging to patients
null, // all locations
java.util.Collections.singletonList("valueNumeric desc"), // sort
order
1, // just one
null, // don't specify any obs group
null, // don't specify date range
null, // don't specify date range
false)
return new Result(obs[0])
-Darius
On Mon, Sep 19, 2011 at 8:14 AM, James Arbaugh <[email protected]>
wrote:
Darius,
You're correct, it required org.openmrs.api.ObsService.
Now, when I try the following groovy code...
return new
Result(org.openmrs.api.ObsService.getObservations(6407,"mostRecentN=1
sort="valueNumeric desc""))
I get...
Hl7inQueue.queueList.errorMessage.header: Invalid Logic Rule.
Caused by:
org.codehaus.groovy.control.MultipleCompilationErrorsException: startup
failed:
script13164429085571793441641.groovy: 10: expecting ')', found
'valueNumeric' @ line 10, column 88.
ons(6407,"mostRecentN=1 sort="valueNumer
When I try the following groovy code...
return new
Result(org.openmrs.api.ObsService.getObservations(6407,"mostRecentN=1
sort="desc""))
I get...
Hl7inQueue.queueList.errorMessage.header: Invalid Logic Rule.
Caused by:
org.codehaus.groovy.control.MultipleCompilationErrorsException: startup
failed:
script13164431339642031039791.groovy: 10: expecting ')', found 'desc' @
line 10, column 88.
ons(6407,"mostRecentN=1 sort="desc""))
When I try the following groovy code...
return new
Result(org.openmrs.api.ObsService.getObservations(6407,"mostRecentN=1
and sort="valueNumeric desc""))
I get...
Hl7inQueue.queueList.errorMessage.header: Invalid Logic Rule.
Caused by:
org.codehaus.groovy.control.MultipleCompilationErrorsException: startup
failed:
script13164431339642031039791.groovy: 10: expecting ')', found 'desc' @
line 10, column 88.
ons(6407,"mostRecentN=1 sort="desc""))
WhenI try the following groovy code...
return new
Result(org.openmrs.api.ObsService.getObservations(6407,"mostRecentN=1
and sort=valueNumeric desc"))
I get...
Hl7inQueue.queueList.errorMessage.header:
groovy.lang.MissingMethodException: No signature of method: static
org.openmrs.api.ObsService.getObservations() is applicable for argument
types: (java.lang.Integer, java.lang.String) values: [6407,
mostRecentN=1 and sort=valueNumeric desc]
What am I doing wrong with the getObservations()? Any idea why the SQL
Groovy code doesn't work?
Roger and Darius,
Thanks for your concerns on blood banking standards. I took up your
suggestions with our medical director concerning the abnormal usage of a
serial number for blood bank baggies. She said "We shouldn't change the
coding system, as it is done like this in every blood bank in Haiti." If
we used a different serial number system, it would confuse them when we
send the blood to Port-au-Prince (I initially suggested using the
encounter_id). The Red Cross is implementing a software system in Haiti,
but it doesn't have a registry for our donors in it, it is essentially
to find out where what kind of blood is in stock, so that it can be
ordered from this hospital if needed. Your concerns on standard practice
should to be taken up at a higher level.
Thanks,
James
From: [email protected] [mailto:[email protected]] On
Behalf Of Darius Jazayeri
Sent: Friday, September 16, 2011 11:25 AM
To: [email protected]
Subject: Re: [OPENMRS-IMPLEMENTERS] Auto-Incrementing Numeric
Observation
James,
You need to do org.openmrs.api.ObsService I think.
-Darius (by phone)
On Sep 16, 2011 8:20 AM, "Friedman, Roger (CDC/CGH/DGHA) (CTR)"
<[email protected]> wrote:
James --
Because of the criticality of blood tracking,
it's important that there be a check digit on your blood bag ID. So
maybe you should use the algorithm from ID generation rather than just a
sequence number.
Also I don't know if you are tracking the blood
after it's processed into different products and then into the patient,
but that's the standard of care for blood. Certainly it would be good
at least to check the blood against your testing records before use,
that's where discrepancies would appear. You'd be better off printing
barcodes and avoid rewriting. There are also standards for that.
I know that we here at CDC are doing blood bank
system strengthening in Haiti and that hospital-based collection and
processing is not the international norm, especially when presence of
transmissible disease is high. Rather, collection efforts are based
around community drives, particularly where young as-yet-uninfected
people can be found, with processing at high-volume centers which
warehouse the products and distribute them to hospitals, with only a few
days supply stored at the hospital.
In short, there are lots of international
standards around bloodbanking that are important and which I can send if
you're interested. There are also commercial solutions which might do
the job cheaper, faster and with better compliance with international
standards than you can.
Saludos, Roger
From: [email protected] [mailto:[email protected]]
On Behalf Of James Arbaugh
Sent: Thursday, September 15, 2011 11:20 PM
To: [email protected]
Subject: Re: [OPENMRS-IMPLEMENTERS] Auto-Incrementing Nu...
Thanks Darius (and Daniel)!
I'm trying to write my Groovy rule, and it's not working like
I...
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