Hi Brad, Not at the moment, but it is still on the radar. More time will be available after the ITK RC's start.
Thanks, Matt On Tue, Jun 17, 2014 at 9:14 AM, Bradley Lowekamp <[email protected]> wrote: > Matt, > > Have you had a change to look into this issue further? > > Thanks, > Brad > > On May 9, 2014, at 8:14 AM, Bradley Lowekamp <[email protected]> wrote: > >> Matt, >> >> SimpleITK's super build passes CMAKE variable with the prefix "ITK_" to the >> ITK external project so customizing the ITK in the superbuild is easy. Here >> is the build script for the system build for the dashboard: >> >> http://open.cdash.org/viewNotes.php?buildid=3322976 >> >> Brad >> >> On May 9, 2014, at 12:33 AM, Matt McCormick <[email protected]> >> wrote: >> >>> Yes [1], but it looks like ITK was not configured correctly? I will >>> try turning on the Review module... >>> >>> [1] http://open.cdash.org/buildSummary.php?buildid=3320996 >>> >>> On Thu, May 8, 2014 at 9:14 AM, Bradley Lowekamp <[email protected]> >>> wrote: >>>> Great, >>>> >>>> Hopefully it's finished by now :) >>>> >>>> Brad >>>> >>>> On May 7, 2014, at 5:46 PM, Matt McCormick <[email protected]> >>>> wrote: >>>> >>>>> Thanks, Brad. >>>>> >>>>> Debug build with those packages on Ubuntu 12.04: >>>>> >>>>> http://open.cdash.org/buildSummary.php?buildid=3320987 >>>>> >>>>> Starting SimpleITK Debug build... >>>>> >>>>> On Wed, May 7, 2014 at 1:39 PM, Bradley Lowekamp <[email protected]> >>>>> wrote: >>>>>> Matt on Ubuntu 12 I have the following installed: >>>>>> >>>>>> libhdf5-serial-1.8.4 install >>>>>> libhdf5-serial-dev install >>>>>> >>>>>> And on RHEL I have: >>>>>> >>>>>> hdf5-devel-1.8.5.patch1-7.el6.x86_64 >>>>>> hdf5-1.8.5.patch1-7.el6.x86_64 >>>>>> >>>>>> Brad >>>>>> >>>>>> On May 7, 2014, at 1:31 PM, Matt McCormick <[email protected]> >>>>>> wrote: >>>>>> >>>>>>> Hi Brad, >>>>>>> >>>>>>> On Ubuntu 12.04, there appears to be a number of HDF5 "-dev" packages: >>>>>>> >>>>>>> libhdf5-lam-dev >>>>>>> libhdf5-mpi-dev >>>>>>> libhdf5-mpich-dev >>>>>>> libhdf5-openmpi-dev >>>>>>> libhdf5-serial-dev >>>>>>> >>>>>>> Which one are you using? >>>>>>> >>>>>>> Thanks, >>>>>>> Matt >>>>>>> >>>>>>> On Wed, May 7, 2014 at 1:23 PM, Matt McCormick >>>>>>> <[email protected]> wrote: >>>>>>>> Hi Brad, >>>>>>>> >>>>>>>> It looks like our code coverage for the HDF TransformIO is pretty good >>>>>>>> [1], but I do not see a dashboard submission for those platforms that >>>>>>>> use a system HDF5. I will set one up on faraway.kitware and try to >>>>>>>> reproduce the SimpleITK test failure. >>>>>>>> >>>>>>>> Thanks, >>>>>>>> Matt >>>>>>>> >>>>>>>> [1] >>>>>>>> http://lorensen.github.io/VTKCodeCoverage/ITK/IO/TransformHDF5/src/index.html >>>>>>>> >>>>>>>> On Wed, May 7, 2014 at 8:59 AM, Bradley Lowekamp >>>>>>>> <[email protected]> wrote: >>>>>>>>> Hello, >>>>>>>>> >>>>>>>>> I wrote some SimpleITK tests to write out HDF5 transforms. They are >>>>>>>>> failing when using ITK built with system HDF5. Specifically with >>>>>>>>> RHEL5 and Ubuntu 12.04. I believe this is a critical issue as it's >>>>>>>>> how ITK is being built for Linux distributions. >>>>>>>>> >>>>>>>>> Looking through my ITK nightly build testing directory I didn't see >>>>>>>>> any hdf5 files which leads me to believe this IO transform format may >>>>>>>>> not be well tested. >>>>>>>>> >>>>>>>>> I would greatly appreciate some assistance on this issue. >>>>>>>>> >>>>>>>>> Here is my related SimpleITK issue. >>>>>>>>> https://issues.itk.org/jira/browse/SIMPLEITK-535 >>>>>>>>> >>>>>>>>> Thanks, >>>>>>>>> Brad >>>>>>>>> >>>>>> >>>> >> >> _______________________________________________ >> Powered by www.kitware.com >> >> Visit other Kitware open-source projects at >> http://www.kitware.com/opensource/opensource.html >> >> Kitware offers ITK Training Courses, for more information visit: >> http://kitware.com/products/protraining.php >> >> Please keep messages on-topic and check the ITK FAQ at: >> http://www.itk.org/Wiki/ITK_FAQ >> >> Follow this link to subscribe/unsubscribe: >> http://www.itk.org/mailman/listinfo/insight-developers > _______________________________________________ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Kitware offers ITK Training Courses, for more information visit: http://kitware.com/products/protraining.php Please keep messages on-topic and check the ITK FAQ at: http://www.itk.org/Wiki/ITK_FAQ Follow this link to subscribe/unsubscribe: http://public.kitware.com/mailman/listinfo/insight-developers
