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https://issues.apache.org/jira/browse/AMQ-3978?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15610533#comment-15610533
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Tim Bain commented on AMQ-3978:
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I believe that AMQ-6203 reduces the severity of the problem by allowing the 
removal of files that are being kept only for the sake of acking messages in a 
file that contains live messages, so it solves part of the problem by 
eliminating chains of journal files.

However, it doesn't eliminate the problem that a single file can be kept alive 
by just one message.  And it doesn't eliminate the need to keep the replayed 
acks around (in the most recent journal file at the time of the replay), so in 
practice you could have as much as two journal files for each message kept for 
long periods of time.  So it's a partial solution (and a very welcome 
improvement, that will substantially reduce the disk space for installations 
where just a few messages are kept for long periods of time), but it's not a 
full solution and it doesn't help installations where a large enough percentage 
of messages are kept such that most journal files contain at least one.

This fix would still be useful, if someone felt like implementing it, but 
AMQ-6203 does reduce the urgency a bit.

> Allow KahaDB to "compact" journal files to remove messages that are no longer 
> needed
> ------------------------------------------------------------------------------------
>
>                 Key: AMQ-3978
>                 URL: https://issues.apache.org/jira/browse/AMQ-3978
>             Project: ActiveMQ
>          Issue Type: Improvement
>          Components: KahaDB, Message Store
>    Affects Versions: 5.6.0
>            Reporter: Tim Bain
>            Priority: Minor
>
> KahaDB uses a write-only journaling approach that ensures that a journal file 
> will be deleted only when no content within it is still in use.  If a single 
> byte of the file is still needed, the entire file must be kept, even if the 
> rest of the file is not needed.
> This works fine when all messages are immediately removed from destinations 
> within an ActiveMQ broker, but it fails ungracefully when messages that are 
> consumed infrequently (or not at all, relying on TTL to delete the messages) 
> are interspersed with large volumes of messages that are consumed quickly.  
> In this scenario, if a single infrequently-consumed message ends up in a 
> journal file with a large number of quickly-consumed messages, the entire 
> file will be kept even though nearly all of the content of the file is no 
> longer needed.  When this happens for enough journal files, the KahaDB's 
> disk/file limits are reached, even though the amount of actual "live" data 
> within the KahaDB is far below the configured limits.
> To fix this, the periodic cleanup task that already looks for files that are 
> unused should be changed so that if it determines that it cannot delete the 
> file because it contains at least one live message but it contains less than 
> a configurable percentage of live messages, the task will rewrite the journal 
> file in question so it contains only those live messages into file, updating 
> any in-memory indices that might show the offsets of messages within the file 
> (if there are any such things). If any in-memory data structures will need to 
> be updated, we need to appropriately synchronize to ensure that no one can 
> use the portions of the data structure related to the file currently being 
> compacted; access to similar information for all other data files can 
> continue unrestricted.
> Note that this will result in us still having potentially many individual 
> files, with each one having a much smaller file size than our target size. If 
> that is problematic, it would be possible to combine multiple partial files 
> together during the compaction process (while respecting the max file size) 
> instead of writing live messages back into their current file.



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