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https://issues.apache.org/jira/browse/AIRAVATA-2621?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16329205#comment-16329205
]
Dimuthu Upeksha commented on AIRAVATA-2621:
-------------------------------------------
Fix will look for the SSHJobSumission instances for a compute resource if the
job submission protocol is SSH. If it can find an instance, it will override
the the host name an port of the ServerInfo bean with the alternateHostName and
the port of the SSHJobSubmission instance.
> SSH port provided in compute resource registration is not considered for
> cluster SSH communication
> --------------------------------------------------------------------------------------------------
>
> Key: AIRAVATA-2621
> URL: https://issues.apache.org/jira/browse/AIRAVATA-2621
> Project: Airavata
> Issue Type: Bug
> Components: GFac
> Affects Versions: 0.18
> Environment: https://hpcgateway.gsu.edu/
> https://scigap.org/
> Reporter: Eroma
> Assignee: Dimuthu Upeksha
> Priority: Major
> Fix For: 0.18
>
>
> 1. Added a specific port for job submissions (15022)
> 2. But when submitting jobs, for environment creation, the gfac is using the
> default 22 port, not the specified one in scigap.org for hpclogin.gsu.edu.
> 3. log messages in airavata log
> 2017-12-19 11:13:18,996 [pool-7-thread-2] INFO
> o.a.airavata.gfac.impl.Factory
> process_id=PROCESS_3b471b3b-5b4e-4b6d-a66e-554652a390d2,
> token_id=35da840b-63d5-4cbf-b9ce-3005cd94d961,
> experiment_id=NWChem2_a38ac303-666f-4dea-9b4c-7bffe0f97dd7,
> gateway_id=georgiastate - Initialize a new SSH session for
> :airavata_hpclogin.gsu.edu_22_35da840b-63d5-4cbf-b9ce-3005cd94d961
> 2017-12-19 11:15:26,272 [pool-7-thread-2] ERROR o.a.a.gfac.core.GFacException
> process_id=PROCESS_3b471b3b-5b4e-4b6d-a66e-554652a390d2,
> token_id=35da840b-63d5-4cbf-b9ce-3005cd94d961,
> experiment_id=NWChem2_a38ac303-666f-4dea-9b4c-7bffe0f97dd7,
> gateway_id=georgiastate - JSch initialization error
> com.jcraft.jsch.JSchException: java.net.ConnectException: Connection timed
> out (Connection timed out)
> at com.jcraft.jsch.Util.createSocket(Util.java:349)
> at com.jcraft.jsch.Session.connect(Session.java:215)
> at com.jcraft.jsch.Session.connect(Session.java:183)
> at
> org.apache.airavata.gfac.impl.Factory.getSSHSession(Factory.java:542)
> at
> org.apache.airavata.gfac.impl.HPCRemoteCluster.getSshSession(HPCRemoteCluster.java:138)
> at
> org.apache.airavata.gfac.impl.HPCRemoteCluster.getSession(HPCRemoteCluster.java:315)
> at
> org.apache.airavata.gfac.impl.HPCRemoteCluster.makeDirectory(HPCRemoteCluster.java:242)
> at
> org.apache.airavata.gfac.impl.task.EnvironmentSetupTask.execute(EnvironmentSetupTask.java:51)
> at
> org.apache.airavata.gfac.impl.GFacEngineImpl.executeTask(GFacEngineImpl.java:814)
> at
> org.apache.airavata.gfac.impl.GFacEngineImpl.configureWorkspace(GFacEngineImpl.java:553)
> at
> org.apache.airavata.gfac.impl.GFacEngineImpl.executeTaskListFrom(GFacEngineImpl.java:324)
> at
> org.apache.airavata.gfac.impl.GFacEngineImpl.executeProcess(GFacEngineImpl.java:286)
> at
> org.apache.airavata.gfac.impl.GFacWorker.executeProcess(GFacWorker.java:227)
> at org.apache.airavata.gfac.impl.GFacWorker.run(GFacWorker.java:86)
> at
> org.apache.airavata.common.logging.MDCUtil.lambda$wrapWithMDC$0(MDCUtil.java:40)
> at
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
> at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
> at java.lang.Thread.run(Thread.java:748)
> Caused by: java.net.ConnectException: Connection timed out (Connection timed
> out)
> at java.net.PlainSocketImpl.socketConnect(Native Method)
> at
> java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
> at
> java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
> at
> java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
> at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
> at java.net.Socket.connect(Socket.java:589)
> at java.net.Socket.connect(Socket.java:538)
> at java.net.Socket.<init>(Socket.java:434)
> at java.net.Socket.<init>(Socket.java:211)
> at com.jcraft.jsch.Util.createSocket(Util.java:343)
> ... 17 common frames omitted
> ?NWChem2_a38ac303-666f-4dea-9b4c-7bffe0f97dd7
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