[
https://issues.apache.org/jira/browse/AIRAVATA-3376?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17201783#comment-17201783
]
Marcus Christie commented on AIRAVATA-3376:
-------------------------------------------
Another error occurs when trying to use Python 3.7. The version of Pillow seems
incompatible:
{code}
Running setup.py install for Pillow: started
Running setup.py install for Pillow: finished with status 'error'
ERROR: Command errored out with exit status 1:
command:
/Users/machrist/Airavata/django/django_airavata_gateway/.tox/py37/bin/python -u
-c 'import sys, setuptools, tokenize; sys.argv[0] =
'"'"'/private/var/folders/mx/qr54v1710vlflx2p8xs59g0mlpz0ml/T/pip-install-3f8_43ie/pillow/setup.py'"'"';
__file__='"'"'/private/var/folders/mx/qr54v1710vlflx2p8xs59g0mlpz0ml/T/pip-install-3f8_43ie/pillow/setup.py'"'"';f=getattr(tokenize,
'"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"',
'"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install
--record
/private/var/folders/mx/qr54v1710vlflx2p8xs59g0mlpz0ml/T/pip-record-aks2lval/install-record.txt
--single-version-externally-managed --compile --install-headers
/Users/machrist/Airavata/django/django_airavata_gateway/.tox/py37/include/site/python3.7/Pillow
cwd:
/private/var/folders/mx/qr54v1710vlflx2p8xs59g0mlpz0ml/T/pip-install-3f8_43ie/pillow/
Complete output (173 lines):
running install
running build
running build_py
creating build
creating build/lib.macosx-10.9-x86_64-3.7
creating build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/MpoImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/ImageMode.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/PngImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/XbmImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/PcxImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/SunImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/ImageFile.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/SpiderImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/TarIO.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/FitsStubImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/MpegImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/BdfFontFile.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/GribStubImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/ImageStat.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/PixarImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/GimpPaletteFile.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/version.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/ImageColor.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/ContainerIO.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/MspImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/MicImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/ImtImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/GifImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/PalmImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/ImageQt.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/ImageMath.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/PaletteFile.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/FontFile.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/ExifTags.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/ImageCms.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/FpxImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/ImageChops.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/BufrStubImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/PSDraw.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/PcdImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/ImageFilter.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/ImageDraw2.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/ImagePath.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/DcxImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/JpegPresets.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/Hdf5StubImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/features.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/ImageDraw.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/GimpGradientFile.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/ImageWin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/IcoImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/_tkinter_finder.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/EpsImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/TgaImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/ImageMorph.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/Jpeg2KImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/WalImageFile.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/PcfFontFile.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/ImageTk.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/GbrImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/ImageOps.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/PdfImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/ImageShow.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/ImageEnhance.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/WmfImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/ImageGrab.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/WebPImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/FliImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/TiffTags.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/CurImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/_util.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/GdImageFile.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/TiffImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/IptcImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/ImagePalette.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/BmpImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/ImageTransform.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/IcnsImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/McIdasImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/XpmImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/OleFileIO.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/DdsImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/ImageSequence.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/PyAccess.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/_binary.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/Image.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/XVThumbImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/SgiImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/ImImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/PsdImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/JpegImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/ImageFont.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/PpmImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
copying PIL/FtexImagePlugin.py -> build/lib.macosx-10.9-x86_64-3.7/PIL
running egg_info
writing Pillow.egg-info/PKG-INFO
writing dependency_links to Pillow.egg-info/dependency_links.txt
writing requirements to Pillow.egg-info/requires.txt
writing top-level names to Pillow.egg-info/top_level.txt
reading manifest file 'Pillow.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.sh'
no previously-included directories found matching 'docs/_static'
warning: no previously-included files found matching '.coveragerc'
warning: no previously-included files found matching 'codecov.yml'
warning: no previously-included files found matching '.editorconfig'
warning: no previously-included files found matching '.landscape.yaml'
warning: no previously-included files found matching '.travis'
warning: no previously-included files found matching '.travis/*'
warning: no previously-included files found matching 'appveyor.yml'
warning: no previously-included files found matching 'build_children.sh'
warning: no previously-included files found matching 'tox.ini'
warning: no previously-included files matching '.git*' found anywhere in
distribution
warning: no previously-included files matching '*.pyc' found anywhere in
distribution
warning: no previously-included files matching '*.so' found anywhere in
distribution
writing manifest file 'Pillow.egg-info/SOURCES.txt'
running build_ext
The headers or library files could not be found for zlib,
a required dependency when compiling Pillow from source.
Please see the install instructions at:
https://pillow.readthedocs.io/en/latest/installation.html
Traceback (most recent call last):
File
"/private/var/folders/mx/qr54v1710vlflx2p8xs59g0mlpz0ml/T/pip-install-3f8_43ie/pillow/setup.py",
line 787, in <module>
zip_safe=not (debug_build() or PLATFORM_MINGW), )
File
"/Users/machrist/Airavata/django/django_airavata_gateway/.tox/py37/lib/python3.7/site-packages/setuptools/__init__.py",
line 163, in setup
return distutils.core.setup(**attrs)
File
"/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/distutils/core.py",
line 148, in setup
dist.run_commands()
File
"/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/distutils/dist.py",
line 966, in run_commands
self.run_command(cmd)
File
"/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/distutils/dist.py",
line 985, in run_command
cmd_obj.run()
File
"/Users/machrist/Airavata/django/django_airavata_gateway/.tox/py37/lib/python3.7/site-packages/setuptools/command/install.py",
line 61, in run
return orig.install.run(self)
File
"/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/distutils/command/install.py",
line 545, in run
self.run_command('build')
File
"/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/distutils/cmd.py",
line 313, in run_command
self.distribution.run_command(command)
File
"/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/distutils/dist.py",
line 985, in run_command
cmd_obj.run()
File
"/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/distutils/command/build.py",
line 135, in run
self.run_command(cmd_name)
File
"/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/distutils/cmd.py",
line 313, in run_command
self.distribution.run_command(command)
File
"/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/distutils/dist.py",
line 985, in run_command
cmd_obj.run()
File
"/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/distutils/command/build_ext.py",
line 340, in run
self.build_extensions()
File
"/private/var/folders/mx/qr54v1710vlflx2p8xs59g0mlpz0ml/T/pip-install-3f8_43ie/pillow/setup.py",
line 577, in build_extensions
raise RequiredDependencyException(f)
__main__.RequiredDependencyException: zlib
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File
"/private/var/folders/mx/qr54v1710vlflx2p8xs59g0mlpz0ml/T/pip-install-3f8_43ie/pillow/setup.py",
line 799, in <module>
raise RequiredDependencyException(msg)
__main__.RequiredDependencyException:
The headers or library files could not be found for zlib,
a required dependency when compiling Pillow from source.
Please see the install instructions at:
https://pillow.readthedocs.io/en/latest/installation.html
----------------------------------------
ERROR: Command errored out with exit status 1:
/Users/machrist/Airavata/django/django_airavata_gateway/.tox/py37/bin/python -u
-c 'import sys, setuptools, tokenize; sys.argv[0] =
'"'"'/private/var/folders/mx/qr54v1710vlflx2p8xs59g0mlpz0ml/T/pip-install-3f8_43ie/pillow/setup.py'"'"';
__file__='"'"'/private/var/folders/mx/qr54v1710vlflx2p8xs59g0mlpz0ml/T/pip-install-3f8_43ie/pillow/setup.py'"'"';f=getattr(tokenize,
'"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"',
'"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install
--record
/private/var/folders/mx/qr54v1710vlflx2p8xs59g0mlpz0ml/T/pip-record-aks2lval/install-record.txt
--single-version-externally-managed --compile --install-headers
/Users/machrist/Airavata/django/django_airavata_gateway/.tox/py37/include/site/python3.7/Pillow
Check the logs for full command output.
{code}
> Wagtail: Problem installing fixtures: no such table: wagtailcore_page__old,
> Python 3.7 incompatibility
> ------------------------------------------------------------------------------------------------------
>
> Key: AIRAVATA-3376
> URL: https://issues.apache.org/jira/browse/AIRAVATA-3376
> Project: Airavata
> Issue Type: Improvement
> Reporter: Marcus Christie
> Assignee: Marcus Christie
> Priority: Major
>
> The version of Django (1.11.29) and Wagtail (2.0) are not compatible with
> Python 3.7+. Newer versions of Django have the fix but 1.11.x didn't get the
> fix.
> Workaround:
> - use Python 3.6
> See also:
> https://code.djangoproject.com/ticket/29182
> https://github.com/wagtail/wagtail/issues/4941
> Stack trace:
> {code}
> Traceback (most recent call last):
> File
> "/Users/akilaishani/Code/US/eroma/airavata-django-portal/venv/lib/python3.7/site-packages/django/db/backends/utils.py",
> line 62, in execute
> return self.cursor.execute(sql)
> File
> "/Users/akilaishani/Code/US/eroma/airavata-django-portal/venv/lib/python3.7/site-packages/django/db/backends/sqlite3/base.py",
> line 326, in execute
> return Database.Cursor.execute(self, query)
> sqlite3.OperationalError: no such table: wagtailcore_page__old
> The above exception was the direct cause of the following exception:
> Traceback (most recent call last):
> File "manage.py", line 22, in <module>
> execute_from_command_line(sys.argv)
> File
> "/Users/akilaishani/Code/US/eroma/airavata-django-portal/venv/lib/python3.7/site-packages/django/core/management/__init__.py",
> line 364, in execute_from_command_line
> utility.execute()
> File
> "/Users/akilaishani/Code/US/eroma/airavata-django-portal/venv/lib/python3.7/site-packages/django/core/management/__init__.py",
> line 356, in execute
> self.fetch_command(subcommand).run_from_argv(self.argv)
> File
> "/Users/akilaishani/Code/US/eroma/airavata-django-portal/venv/lib/python3.7/site-packages/django/core/management/base.py",
> line 283, in run_from_argv
> self.execute(*args, **cmd_options)
> File
> "/Users/akilaishani/Code/US/eroma/airavata-django-portal/venv/lib/python3.7/site-packages/django/core/management/base.py",
> line 330, in execute
> output = self.handle(*args, **options)
> File
> "/Users/akilaishani/Code/US/eroma/airavata-django-portal/django_airavata/wagtailapps/base/management/commands/load_cms_data.py",
> line 36, in handle
> call_command('loaddata', fixture_file, verbosity=0)
> File
> "/Users/akilaishani/Code/US/eroma/airavata-django-portal/venv/lib/python3.7/site-packages/django/core/management/__init__.py",
> line 131, in call_command
> return command.execute(*args, **defaults)
> File
> "/Users/akilaishani/Code/US/eroma/airavata-django-portal/venv/lib/python3.7/site-packages/django/core/management/base.py",
> line 330, in execute
> output = self.handle(*args, **options)
> File
> "/Users/akilaishani/Code/US/eroma/airavata-django-portal/venv/lib/python3.7/site-packages/django/core/management/commands/loaddata.py",
> line 69, in handle
> self.loaddata(fixture_labels)
> File
> "/Users/akilaishani/Code/US/eroma/airavata-django-portal/venv/lib/python3.7/site-packages/django/core/management/commands/loaddata.py",
> line 115, in loaddata
> connection.check_constraints(table_names=table_names)
> File
> "/Users/akilaishani/Code/US/eroma/airavata-django-portal/venv/lib/python3.7/site-packages/django/db/backends/sqlite3/base.py",
> line 286, in check_constraints
> column_name, referenced_column_name,
> File
> "/Users/akilaishani/Code/US/eroma/airavata-django-portal/venv/lib/python3.7/site-packages/django/db/backends/utils.py",
> line 79, in execute
> return super(CursorDebugWrapper, self).execute(sql, params)
> File
> "/Users/akilaishani/Code/US/eroma/airavata-django-portal/venv/lib/python3.7/site-packages/django/db/backends/utils.py",
> line 64, in execute
> return self.cursor.execute(sql, params)
> File
> "/Users/akilaishani/Code/US/eroma/airavata-django-portal/venv/lib/python3.7/site-packages/django/db/utils.py",
> line 94, in __exit__
> six.reraise(dj_exc_type, dj_exc_value, traceback)
> File
> "/Users/akilaishani/Code/US/eroma/airavata-django-portal/venv/lib/python3.7/site-packages/django/utils/six.py",
> line 685, in reraise
> raise value.with_traceback(tb)
> File
> "/Users/akilaishani/Code/US/eroma/airavata-django-portal/venv/lib/python3.7/site-packages/django/db/backends/utils.py",
> line 62, in execute
> return self.cursor.execute(sql)
> File
> "/Users/akilaishani/Code/US/eroma/airavata-django-portal/venv/lib/python3.7/site-packages/django/db/backends/sqlite3/base.py",
> line 326, in execute
> return Database.Cursor.execute(self, query)
> django.db.utils.OperationalError: Problem installing fixtures: no such table:
> wagtailcore_page__old
> {code}
> h5. TODO
> - [ ] integrate tox for running Python unittests against multiple Python
> versions
> - [ ] Upgrade to more recent and supported Django and Wagtail
> - [ ] Upgrade to more recent and supported Python
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