girip opened a new issue, #30:
URL: https://github.com/apache/airavata-cerebrum/issues/30
I got the following error on pip install
(base) ~ pip install airavata-cerebrum
Collecting airavata-cerebrum
Downloading airavata_cerebrum-0.1.2-py3-none-any.whl.metadata (5.8 kB)
Collecting allensdk>=2.16 (from airavata-cerebrum)
Downloading allensdk-2.16.2-py3-none-any.whl.metadata (1.9 kB)
Collecting altair>=6.0 (from airavata-cerebrum)
Downloading altair-6.2.1-py3-none-any.whl.metadata (11 kB)
Collecting anndata>=0.10 (from airavata-cerebrum)
Downloading anndata-0.12.16-py3-none-any.whl.metadata (9.9 kB)
Collecting anywidget>=0.9 (from airavata-cerebrum)
Downloading anywidget-0.11.0-py3-none-any.whl.metadata (8.9 kB)
Collecting awitree>=0.1 (from airavata-cerebrum)
Downloading awitree-0.1.0-py2.py3-none-any.whl.metadata (2.4 kB)
Collecting duckdb>=1.2 (from airavata-cerebrum)
Downloading duckdb-1.5.3-cp312-cp312-macosx_11_0_arm64.whl.metadata (4.2
kB)
Collecting fastexcel>=0.13 (from airavata-cerebrum)
Downloading fastexcel-0.20.2-cp310-abi3-macosx_11_0_arm64.whl.metadata
(7.2 kB)
Collecting h5py>=3.15 (from airavata-cerebrum)
Downloading h5py-3.16.0-cp312-cp312-macosx_11_0_arm64.whl.metadata (3.0 kB)
Collecting ipytree>=0.2 (from airavata-cerebrum)
Downloading ipytree-0.2.2-py2.py3-none-any.whl.metadata (849 bytes)
Requirement already satisfied: ipywidgets>=8.1 in
/opt/anaconda3/lib/python3.12/site-packages (from airavata-cerebrum) (8.1.5)
Requirement already satisfied: jupyter in
/opt/anaconda3/lib/python3.12/site-packages (from airavata-cerebrum) (1.0.0)
Collecting lmfit (from airavata-cerebrum)
Downloading lmfit-1.3.4-py3-none-any.whl.metadata (8.8 kB)
Requirement already satisfied: matplotlib>=3.7 in
/opt/anaconda3/lib/python3.12/site-packages (from airavata-cerebrum) (3.10.5)
Collecting neuroanalysis>=0.0.7 (from airavata-cerebrum)
Downloading neuroanalysis-0.0.7.tar.gz (1.8 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 12.7 MB/s 0:00:00
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Collecting numba>=0.63 (from airavata-cerebrum)
Downloading numba-0.65.1-cp312-cp312-macosx_12_0_arm64.whl.metadata (2.9
kB)
Requirement already satisfied: numpy>=1.23 in
/opt/anaconda3/lib/python3.12/site-packages (from airavata-cerebrum) (1.26.4)
Requirement already satisfied: openpyxl>=3.1 in
/opt/anaconda3/lib/python3.12/site-packages (from airavata-cerebrum) (3.1.2)
Requirement already satisfied: pandas>=1.5 in
/opt/anaconda3/lib/python3.12/site-packages (from airavata-cerebrum) (2.3.1)
Collecting parse>=1.20 (from airavata-cerebrum)
Downloading parse-1.22.1-py2.py3-none-any.whl.metadata (21 kB)
Requirement already satisfied: pillow in
/opt/anaconda3/lib/python3.12/site-packages (from airavata-cerebrum) (10.3.0)
Collecting polars>=1.26 (from airavata-cerebrum)
Downloading polars-1.41.2-py3-none-any.whl.metadata (10 kB)
Collecting psutil>=7.0 (from airavata-cerebrum)
Downloading psutil-7.2.2-cp36-abi3-macosx_11_0_arm64.whl.metadata (22 kB)
Collecting psycopg2 (from airavata-cerebrum)
Downloading psycopg2-2.9.12.tar.gz (379 kB)
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Requirement already satisfied: pydantic>=2.7 in
/opt/anaconda3/lib/python3.12/site-packages (from airavata-cerebrum) (2.11.4)
Collecting pyqtgraph>=0.13.0 (from airavata-cerebrum)
Downloading pyqtgraph-0.14.0-py3-none-any.whl.metadata (1.5 kB)
Collecting python-jsonpath>=1.2.0 (from airavata-cerebrum)
Downloading python_jsonpath-2.0.2-py3-none-any.whl.metadata (6.6 kB)
Requirement already satisfied: pyyaml>=6.0 in
/opt/anaconda3/lib/python3.12/site-packages (from airavata-cerebrum) (6.0.1)
Requirement already satisfied: requests>=2.31 in
/opt/anaconda3/lib/python3.12/site-packages (from airavata-cerebrum) (2.32.2)
Collecting scanpy>=1.9 (from airavata-cerebrum)
Downloading scanpy-1.12.1-py3-none-any.whl.metadata (8.4 kB)
Collecting scikit-image>=0.24 (from airavata-cerebrum)
Downloading scikit_image-0.26.0-cp312-cp312-macosx_11_0_arm64.whl.metadata
(15 kB)
Collecting scikit-learn>=1.7.2 (from airavata-cerebrum)
Downloading scikit_learn-1.9.0-cp312-cp312-macosx_12_0_arm64.whl.metadata
(11 kB)
Requirement already satisfied: scipy>=1.9 in
/opt/anaconda3/lib/python3.12/site-packages (from airavata-cerebrum) (1.13.1)
Requirement already satisfied: seaborn>=0.13 in
/opt/anaconda3/lib/python3.12/site-packages (from airavata-cerebrum) (0.13.2)
Requirement already satisfied: sqlalchemy>=2.0 in
/opt/anaconda3/lib/python3.12/site-packages (from airavata-cerebrum) (2.0.30)
Collecting statsmodels>=0.14.6 (from airavata-cerebrum)
Downloading statsmodels-0.14.6-cp312-cp312-macosx_11_0_arm64.whl.metadata
(9.5 kB)
Requirement already satisfied: tqdm>=4.66 in
/opt/anaconda3/lib/python3.12/site-packages (from airavata-cerebrum) (4.67.1)
Requirement already satisfied: traitlets>=5.1 in
/opt/anaconda3/lib/python3.12/site-packages (from airavata-cerebrum) (5.14.3)
Collecting psycopg2-binary (from allensdk>=2.16->airavata-cerebrum)
Downloading
psycopg2_binary-2.9.12-cp312-cp312-macosx_11_0_arm64.whl.metadata (4.9 kB)
Requirement already satisfied: hdmf!=3.5.*,!=3.6.*,!=3.7.*,!=3.8.* in
/opt/anaconda3/lib/python3.12/site-packages (from
allensdk>=2.16->airavata-cerebrum) (4.0.0)
Collecting numpy>=1.23 (from airavata-cerebrum)
Downloading numpy-1.23.5.tar.gz (10.7 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 10.7/10.7 MB 39.4 MB/s 0:00:00
Installing build dependencies ... done
Getting requirements to build wheel ... error
error: subprocess-exited-with-error
× Getting requirements to build wheel did not run successfully.
│ exit code: 1
╰─> [33 lines of output]
Traceback (most recent call last):
File
"/opt/anaconda3/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py",
line 389, in <module>
main()
File
"/opt/anaconda3/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py",
line 373, in main
json_out["return_val"] = hook(**hook_input["kwargs"])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/opt/anaconda3/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py",
line 137, in get_requires_for_build_wheel
backend = _build_backend()
^^^^^^^^^^^^^^^^
File
"/opt/anaconda3/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py",
line 70, in _build_backend
obj = import_module(mod_path)
^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/anaconda3/lib/python3.12/importlib/__init__.py", line 90,
in import_module
return _bootstrap._gcd_import(name[level:], package, level)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "<frozen importlib._bootstrap>", line 1387, in _gcd_import
File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
File "<frozen importlib._bootstrap>", line 1310, in
_find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 488, in
_call_with_frames_removed
File "<frozen importlib._bootstrap>", line 1387, in _gcd_import
File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
File "<frozen importlib._bootstrap>", line 1331, in
_find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 995, in
exec_module
File "<frozen importlib._bootstrap>", line 488, in
_call_with_frames_removed
File
"/private/var/folders/xb/7s9bzr7s4pn88h222dpgpw3c0000gs/T/pip-build-env-ozz59w36/overlay/lib/python3.12/site-packages/setuptools/__init__.py",
line 16, in <module>
import setuptools.version
File
"/private/var/folders/xb/7s9bzr7s4pn88h222dpgpw3c0000gs/T/pip-build-env-ozz59w36/overlay/lib/python3.12/site-packages/setuptools/version.py",
line 1, in <module>
import pkg_resources
File
"/private/var/folders/xb/7s9bzr7s4pn88h222dpgpw3c0000gs/T/pip-build-env-ozz59w36/overlay/lib/python3.12/site-packages/pkg_resources/__init__.py",
line 2172, in <module>
register_finder(pkgutil.ImpImporter, find_on_path)
^^^^^^^^^^^^^^^^^^^
AttributeError: module 'pkgutil' has no attribute 'ImpImporter'. Did
you mean: 'zipimporter'?
[end of output]
note: This error originates from a subprocess, and is likely not a problem
with pip.
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