Major Speed Improvement to 1D Discrete Fourier Transform (approximately 5x-9x 
improvement). Preserved public API 100%. Removed unnecessary use of instance 
variables and instance state.
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                 Key: MATH-732
                 URL: https://issues.apache.org/jira/browse/MATH-732
             Project: Commons Math
          Issue Type: Improvement
    Affects Versions: 3.0
            Reporter: Kurt Ostfeld
             Fix For: 3.0
         Attachments: FastFourierTransformer.java.diff, 
FastFourierTransformerTest.java.diff

I wrote my own Discrete Fourier Transform function in Java and ran some 
benchmarks and found that it ran dramatically faster than the Apache library 
implementation. This is a pretty straight forward implementation of the 
standard Cooley Tukey algorithm that I read out of a textbook. This passes all 
the Apache library test cases plus several I had written on my own. I created a 
source code library patch that preserves the public API completely while 
changing the internal implementation to achieve the performance improvement.

In addition to the performance issue, I suggest that Discrete Fourier Transform 
functionality be provided as stateless pure functions (in Java this would be 
implemented with static methods) just like most other math functions. As-is, 
the library requires the user to instantiate a Transformer instance which 
maintains instance state, which is an unecessary complexity for a pure math 
function. I held off on this change since it would change the public API and 
affect existing code. However, I see similar backward compatability breaking 
API changes are already in the FastFourierTransformer class in the 3.0 code 
base.

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